More than 300 homologs were found in PanDaTox collection
for query gene M446_5044 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_5044  LuxR family transcriptional regulator  100 
 
 
230 aa  444  1.0000000000000001e-124  Methylobacterium sp. 4-46  Bacteria  normal  0.263575  hitchhiker  0.00837426 
 
 
-
 
NC_011894  Mnod_5351  transcriptional regulator, LuxR family  80.95 
 
 
229 aa  325  4.0000000000000003e-88  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.649636  n/a   
 
 
-
 
NC_010505  Mrad2831_0756  LuxR family transcriptional regulator  59.05 
 
 
228 aa  201  6e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.826443 
 
 
-
 
NC_011757  Mchl_2254  transcriptional regulator, LuxR family  56.67 
 
 
235 aa  192  5e-48  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1932  transcriptional regulator, LuxR family  55.02 
 
 
241 aa  191  7e-48  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0592371 
 
 
-
 
NC_010172  Mext_1977  regulatory protein LuxR  56.19 
 
 
235 aa  187  1e-46  Methylobacterium extorquens PA1  Bacteria  normal  0.215897  normal 
 
 
-
 
NC_010505  Mrad2831_1294  LuxR family transcriptional regulator  50.23 
 
 
252 aa  167  2e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  33.01 
 
 
224 aa  86.7  3e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3576  two component LuxR family transcriptional regulator  33.33 
 
 
228 aa  79.3  0.00000000000004  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  35.8 
 
 
210 aa  77  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000518478 
 
 
-
 
NC_008752  Aave_1121  two component LuxR family transcriptional regulator  34.17 
 
 
222 aa  77.4  0.0000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.864132  normal  0.872256 
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  33.99 
 
 
210 aa  77.4  0.0000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  31.4 
 
 
214 aa  76.6  0.0000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  31.09 
 
 
233 aa  76.6  0.0000000000003  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  30.73 
 
 
215 aa  76.3  0.0000000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  31.4 
 
 
214 aa  75.9  0.0000000000005  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  25.12 
 
 
214 aa  73.9  0.000000000002  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  36.36 
 
 
218 aa  73.9  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  29.38 
 
 
215 aa  73.9  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.96 
 
 
213 aa  73.6  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  37.24 
 
 
220 aa  73.9  0.000000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.929677 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  31.71 
 
 
213 aa  73.6  0.000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  29.06 
 
 
223 aa  73.6  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  34.06 
 
 
216 aa  73.2  0.000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal 
 
 
-
 
NC_011094  SeSA_A1489  EsrB  26.06 
 
 
212 aa  72.8  0.000000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.121116  normal  0.320198 
 
 
-
 
NC_011205  SeD_A1950  hypothetical protein  26.06 
 
 
212 aa  72.8  0.000000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0094858 
 
 
-
 
NC_011083  SeHA_C1526  two-component response regulator EsrB  26.06 
 
 
212 aa  72.8  0.000000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  hitchhiker  0.00169027 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  27.31 
 
 
215 aa  72.4  0.000000000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  27.98 
 
 
218 aa  71.6  0.000000000008  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1780  EsrB  26.06 
 
 
212 aa  72  0.000000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.111024  n/a   
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  25.12 
 
 
214 aa  71.6  0.000000000009  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  30.73 
 
 
217 aa  71.2  0.00000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  29.35 
 
 
215 aa  70.9  0.00000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  36.59 
 
 
231 aa  70.9  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  30.65 
 
 
214 aa  70.5  0.00000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  29.35 
 
 
215 aa  70.9  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  29.35 
 
 
215 aa  70.9  0.00000000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  29.35 
 
 
215 aa  70.9  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  28.44 
 
 
215 aa  70.9  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  28.44 
 
 
215 aa  70.5  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  29.35 
 
 
215 aa  70.9  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4823  two component transcriptional regulator, LuxR family  26.62 
 
 
214 aa  70.1  0.00000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.103693  normal  0.11387 
 
 
-
 
NC_009719  Plav_3606  two component LuxR family transcriptional regulator  36.64 
 
 
208 aa  70.1  0.00000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  29.41 
 
 
213 aa  70.1  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  32.42 
 
 
214 aa  70.1  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  31.44 
 
 
222 aa  69.7  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_009656  PSPA7_3950  LuxR family DNA-binding response regulator  38.05 
 
 
210 aa  69.7  0.00000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.331441  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  34.62 
 
 
214 aa  69.7  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0560765 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  34.62 
 
 
214 aa  69.7  0.00000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  31.89 
 
 
214 aa  70.1  0.00000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  29.53 
 
 
215 aa  70.1  0.00000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  32.42 
 
 
214 aa  70.1  0.00000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  33.83 
 
 
214 aa  69.7  0.00000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.10411 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  34.62 
 
 
214 aa  69.7  0.00000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00685344 
 
 
-
 
NC_007492  Pfl01_3254  two component LuxR family transcriptional regulator  35.25 
 
 
201 aa  69.7  0.00000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.49762 
 
 
-
 
NC_010571  Oter_0370  two component LuxR family transcriptional regulator  38.46 
 
 
214 aa  69.3  0.00000000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.273913 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  27.4 
 
 
214 aa  69.3  0.00000000005  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_008687  Pden_4349  two component LuxR family transcriptional regulator  35.9 
 
 
206 aa  69.3  0.00000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.20794  normal  0.534464 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  30.86 
 
 
215 aa  69.3  0.00000000005  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_011080  SNSL254_A1504  hypothetical protein  25.53 
 
 
212 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000918459 
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  36.97 
 
 
210 aa  68.6  0.00000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.016821 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  33.81 
 
 
216 aa  68.6  0.00000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  29.58 
 
 
206 aa  67.8  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  28.7 
 
 
221 aa  68.2  0.0000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  29.17 
 
 
214 aa  67.8  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  32.62 
 
 
224 aa  67  0.0000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  22.94 
 
 
220 aa  67  0.0000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  27.05 
 
 
215 aa  67  0.0000000003  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  26.61 
 
 
223 aa  66.6  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  30.17 
 
 
208 aa  67  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  33.11 
 
 
210 aa  66.6  0.0000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0357  two-component response regulator  29.5 
 
 
210 aa  66.6  0.0000000003  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00848176  normal 
 
 
-
 
NC_004578  PSPTO_0897  DNA-binding response regulator, LuxR family  32.2 
 
 
207 aa  66.2  0.0000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  32.06 
 
 
209 aa  66.2  0.0000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  27.03 
 
 
229 aa  65.9  0.0000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  33.1 
 
 
212 aa  65.9  0.0000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  29.93 
 
 
211 aa  65.9  0.0000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  31.97 
 
 
217 aa  65.5  0.0000000006  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  34.53 
 
 
206 aa  65.5  0.0000000006  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  27.05 
 
 
213 aa  65.5  0.0000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  33.57 
 
 
228 aa  65.5  0.0000000007  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  31.51 
 
 
214 aa  65.1  0.0000000008  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  25.35 
 
 
212 aa  65.1  0.0000000008  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  26.11 
 
 
211 aa  65.1  0.0000000009  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  27.96 
 
 
213 aa  64.3  0.000000001  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  27.7 
 
 
210 aa  64.7  0.000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  32.65 
 
 
210 aa  64.7  0.000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  28.02 
 
 
208 aa  64.7  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  27.96 
 
 
213 aa  64.3  0.000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_014211  Ndas_5233  two component transcriptional regulator, LuxR family  31.22 
 
 
223 aa  64.7  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.114456  hitchhiker  0.000738291 
 
 
-
 
NC_012560  Avin_41040  Two-component response regulator, LuxR family  40.32 
 
 
208 aa  64.7  0.000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.136918  n/a   
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  28.49 
 
 
213 aa  64.3  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1286  two component LuxR family transcriptional regulator  31.11 
 
 
213 aa  63.5  0.000000002  Serratia proteamaculans 568  Bacteria  normal  normal  0.172682 
 
 
-
 
NC_009801  EcE24377A_3175  LuxR family transcriptional regulator  30.51 
 
 
148 aa  63.5  0.000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  29.79 
 
 
207 aa  63.9  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.126193 
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  32.65 
 
 
210 aa  64.3  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  27.51 
 
 
206 aa  63.5  0.000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  28.87 
 
 
212 aa  63.9  0.000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  32.86 
 
 
228 aa  63.5  0.000000002  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal 
 
 
-
 
NC_013037  Dfer_5727  two component transcriptional regulator, LuxR family  31.58 
 
 
212 aa  63.9  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.412106 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>