More than 300 homologs were found in PanDaTox collection
for query gene Rmet_3576 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_3576  two component LuxR family transcriptional regulator  100 
 
 
228 aa  446  1.0000000000000001e-124  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  81.28 
 
 
231 aa  335  5e-91  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  67.48 
 
 
214 aa  260  1e-68  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  65.55 
 
 
214 aa  258  4e-68  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  60.75 
 
 
215 aa  243  1.9999999999999999e-63  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  5e-63  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  5e-63  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  5e-63  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  5e-63  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  5e-63  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  60.28 
 
 
215 aa  241  7.999999999999999e-63  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  58.96 
 
 
215 aa  236  2e-61  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  57.66 
 
 
214 aa  234  8e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  234  1.0000000000000001e-60  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0560765 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  233  1.0000000000000001e-60  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  234  1.0000000000000001e-60  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  234  1.0000000000000001e-60  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00685344 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  233  2.0000000000000002e-60  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  58.11 
 
 
214 aa  229  2e-59  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.10411 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  57.62 
 
 
213 aa  221  9.999999999999999e-57  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  54.07 
 
 
213 aa  217  1e-55  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  56.88 
 
 
215 aa  217  1e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  55.96 
 
 
218 aa  213  1.9999999999999998e-54  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  51.47 
 
 
214 aa  197  7.999999999999999e-50  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  50.72 
 
 
224 aa  193  1e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  51.47 
 
 
217 aa  185  6e-46  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  51.67 
 
 
214 aa  181  1e-44  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  50 
 
 
220 aa  177  1e-43  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.929677 
 
 
-
 
NC_012560  Avin_41040  Two-component response regulator, LuxR family  49.52 
 
 
208 aa  170  2e-41  Azotobacter vinelandii DJ  Bacteria  normal  0.136918  n/a   
 
 
-
 
NC_007614  Nmul_A0728  two component LuxR family transcriptional regulator  40.85 
 
 
217 aa  167  9e-41  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1121  two component LuxR family transcriptional regulator  47.69 
 
 
222 aa  167  9e-41  Acidovorax citrulli AAC00-1  Bacteria  normal  0.864132  normal  0.872256 
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  47.83 
 
 
210 aa  164  1.0000000000000001e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  44.23 
 
 
206 aa  156  3e-37  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  41.35 
 
 
206 aa  155  5.0000000000000005e-37  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  41.58 
 
 
233 aa  155  6e-37  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  43.9 
 
 
213 aa  154  1e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  40.69 
 
 
215 aa  153  2e-36  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  38.16 
 
 
212 aa  153  2e-36  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  38.81 
 
 
220 aa  153  2e-36  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  41.01 
 
 
229 aa  152  4e-36  Opitutus terrae PB90-1  Bacteria  normal  normal  0.460798 
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  39.27 
 
 
215 aa  152  5e-36  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  38.76 
 
 
206 aa  151  8e-36  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  40.38 
 
 
213 aa  151  8e-36  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  36.45 
 
 
218 aa  150  1e-35  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_007948  Bpro_0709  two component LuxR family transcriptional regulator  39.29 
 
 
224 aa  149  4e-35  Polaromonas sp. JS666  Bacteria  normal  0.421893  normal 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  40.19 
 
 
218 aa  149  4e-35  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4229  two component LuxR family transcriptional regulator  48.06 
 
 
219 aa  148  5e-35  Acidovorax citrulli AAC00-1  Bacteria  normal  0.720334  normal  0.28913 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  38.03 
 
 
216 aa  148  7e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  38.16 
 
 
212 aa  147  1.0000000000000001e-34  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  41.12 
 
 
218 aa  147  1.0000000000000001e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  37.44 
 
 
232 aa  147  1.0000000000000001e-34  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  41.78 
 
 
223 aa  147  1.0000000000000001e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  37.44 
 
 
232 aa  146  2.0000000000000003e-34  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  41.18 
 
 
208 aa  146  2.0000000000000003e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  40.48 
 
 
219 aa  146  2.0000000000000003e-34  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  40 
 
 
217 aa  147  2.0000000000000003e-34  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  40 
 
 
216 aa  147  2.0000000000000003e-34  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  45.19 
 
 
217 aa  145  3e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  37.68 
 
 
216 aa  145  4.0000000000000006e-34  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  35.81 
 
 
217 aa  145  6e-34  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  39.25 
 
 
218 aa  145  6e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  35.81 
 
 
217 aa  145  6e-34  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  36.67 
 
 
213 aa  145  7.0000000000000006e-34  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  36.67 
 
 
213 aa  145  7.0000000000000006e-34  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  41.47 
 
 
220 aa  144  1e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  41.26 
 
 
214 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  36.16 
 
 
223 aa  143  2e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  39.81 
 
 
213 aa  143  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  38.25 
 
 
217 aa  143  2e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  38.32 
 
 
218 aa  142  3e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  38.32 
 
 
218 aa  142  3e-33  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  36.67 
 
 
215 aa  143  3e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  41.98 
 
 
215 aa  142  5e-33  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  41.98 
 
 
215 aa  142  5e-33  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  41.98 
 
 
215 aa  142  5e-33  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  40.28 
 
 
223 aa  142  6e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  37.04 
 
 
222 aa  141  7e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  36.97 
 
 
232 aa  140  9.999999999999999e-33  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  37.27 
 
 
274 aa  140  9.999999999999999e-33  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  35.85 
 
 
218 aa  141  9.999999999999999e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  37.91 
 
 
215 aa  140  9.999999999999999e-33  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  41.31 
 
 
244 aa  140  9.999999999999999e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  35.1 
 
 
220 aa  140  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  37.16 
 
 
219 aa  140  1.9999999999999998e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0043  two component LuxR family transcriptional regulator  33.93 
 
 
234 aa  139  3e-32  Opitutus terrae PB90-1  Bacteria  normal  normal  0.14113 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  40.27 
 
 
223 aa  139  4.999999999999999e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  40.09 
 
 
219 aa  139  4.999999999999999e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  38.5 
 
 
223 aa  138  6e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_010505  Mrad2831_0320  two component LuxR family transcriptional regulator  40.29 
 
 
221 aa  138  6e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.15389  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  38.94 
 
 
222 aa  138  7e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  37.86 
 
 
213 aa  138  7e-32  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  32.87 
 
 
218 aa  138  7.999999999999999e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1971  two component transcriptional regulator, LuxR family  36.06 
 
 
216 aa  138  8.999999999999999e-32  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  37.73 
 
 
224 aa  137  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  36.06 
 
 
215 aa  137  2e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  37.09 
 
 
215 aa  136  2e-31  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  38.99 
 
 
218 aa  136  3.0000000000000003e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  37.21 
 
 
264 aa  136  3.0000000000000003e-31  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  38.94 
 
 
215 aa  135  5e-31  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  36.94 
 
 
214 aa  135  6.0000000000000005e-31  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>