More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_1325 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_1325  transcriptional regulator, LuxR family  100 
 
 
216 aa  448  1e-125  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013721  HMPREF0424_0504  transcriptional regulator, LuxR family  30.99 
 
 
217 aa  115  6.9999999999999995e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.0705101 
 
 
-
 
NC_010816  BLD_1646  response regulator of two component system  31.02 
 
 
234 aa  108  5e-23  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  27.14 
 
 
224 aa  89.7  3e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0169  transcriptional regulator, LuxR family  28.97 
 
 
246 aa  89.4  4e-17  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  29.82 
 
 
215 aa  84.7  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  29.15 
 
 
239 aa  84.3  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  30 
 
 
235 aa  84.3  0.000000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  28.17 
 
 
219 aa  83.2  0.000000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  29.49 
 
 
218 aa  82.8  0.000000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  28.77 
 
 
224 aa  81.6  0.000000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  27.15 
 
 
228 aa  80.1  0.00000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  28 
 
 
214 aa  79.3  0.00000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_010718  Nther_0747  two component transcriptional regulator, LuxR family  25.11 
 
 
232 aa  78.6  0.00000000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.643618  normal  0.38139 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  29.33 
 
 
231 aa  78.2  0.00000000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  27.91 
 
 
230 aa  78.2  0.0000000000001  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  26.44 
 
 
218 aa  77  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013172  Bfae_05830  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.17 
 
 
238 aa  77  0.0000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.388223  n/a   
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  26.91 
 
 
232 aa  77.4  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  27.91 
 
 
235 aa  77.4  0.0000000000002  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_014158  Tpau_0647  two component transcriptional regulator, LuxR family  28.02 
 
 
212 aa  77  0.0000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.518884  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  24.63 
 
 
232 aa  75.5  0.0000000000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_009523  RoseRS_0454  two component LuxR family transcriptional regulator  29.61 
 
 
208 aa  75.5  0.0000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.698939  hitchhiker  0.00367889 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  28.85 
 
 
216 aa  75.1  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  26.09 
 
 
238 aa  75.1  0.0000000000008  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  26.39 
 
 
228 aa  75.1  0.0000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_013174  Jden_1602  two component transcriptional regulator, LuxR family  27.4 
 
 
226 aa  74.7  0.0000000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  27.4 
 
 
215 aa  74.7  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  27.54 
 
 
215 aa  74.7  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.23 
 
 
222 aa  73.6  0.000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  26.07 
 
 
224 aa  73.9  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  24.41 
 
 
214 aa  73.9  0.000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  27.75 
 
 
223 aa  73.6  0.000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  25.47 
 
 
236 aa  73.9  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  27.48 
 
 
230 aa  73.9  0.000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  26.91 
 
 
225 aa  73.6  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  27.4 
 
 
218 aa  73.9  0.000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  27.1 
 
 
212 aa  73.2  0.000000000003  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  26.76 
 
 
215 aa  73.2  0.000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  26.61 
 
 
219 aa  73.2  0.000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  26.17 
 
 
211 aa  73.2  0.000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  25.6 
 
 
216 aa  73.2  0.000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  27.05 
 
 
215 aa  73.2  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  25.6 
 
 
228 aa  72.8  0.000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  26.47 
 
 
219 aa  72.8  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0565  two component transcriptional regulator, LuxR family  26.89 
 
 
213 aa  72.8  0.000000000004  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.07 
 
 
236 aa  72.4  0.000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  26.15 
 
 
241 aa  72.8  0.000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  27.15 
 
 
233 aa  72.4  0.000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  26.64 
 
 
226 aa  72.4  0.000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  26.05 
 
 
215 aa  72.4  0.000000000005  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.02 
 
 
222 aa  72.4  0.000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  26.57 
 
 
214 aa  72.4  0.000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  25.6 
 
 
250 aa  72.4  0.000000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.31 
 
 
226 aa  72.4  0.000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  25.12 
 
 
226 aa  72  0.000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  24.12 
 
 
230 aa  72  0.000000000006  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  24.64 
 
 
225 aa  72  0.000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013947  Snas_3324  two component transcriptional regulator, LuxR family  26.47 
 
 
219 aa  71.6  0.000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0107044  normal  0.345616 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  26.83 
 
 
214 aa  71.2  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  31.79 
 
 
217 aa  71.2  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_013169  Ksed_06250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.67 
 
 
228 aa  71.2  0.00000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  24.39 
 
 
215 aa  70.9  0.00000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  24.65 
 
 
226 aa  70.9  0.00000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013441  Gbro_4528  response regulator receiver  27.4 
 
 
213 aa  70.9  0.00000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  27.31 
 
 
232 aa  71.2  0.00000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  24.19 
 
 
221 aa  70.9  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013947  Snas_1734  two component transcriptional regulator, LuxR family  30.56 
 
 
188 aa  71.2  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.34281  normal 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  25.59 
 
 
211 aa  71.2  0.00000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  27.88 
 
 
220 aa  70.5  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_006274  BCZK3023  response regulator  29.07 
 
 
597 aa  70.1  0.00000000002  Bacillus cereus E33L  Bacteria  decreased coverage  0.000011368  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  27.01 
 
 
215 aa  70.1  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013093  Amir_3314  two component transcriptional regulator, LuxR family  23.98 
 
 
222 aa  70.5  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00833126  n/a   
 
 
-
 
NC_009664  Krad_2658  two component transcriptional regulator, LuxR family  28.57 
 
 
215 aa  70.5  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2743  two component LuxR family transcriptional regulator  27.27 
 
 
215 aa  70.5  0.00000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.231043  normal 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  24.77 
 
 
257 aa  70.1  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  27.27 
 
 
302 aa  70.1  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  27.1 
 
 
217 aa  69.7  0.00000000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  25.23 
 
 
258 aa  69.7  0.00000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_011145  AnaeK_2846  two component transcriptional regulator, LuxR family  26.79 
 
 
215 aa  69.7  0.00000000003  Anaeromyxobacter sp. K  Bacteria  normal  0.243379  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  24.17 
 
 
230 aa  69.7  0.00000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  24.39 
 
 
215 aa  69.7  0.00000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.7 
 
 
211 aa  69.7  0.00000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  24.88 
 
 
215 aa  69.7  0.00000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  25.82 
 
 
209 aa  70.1  0.00000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2938  two component transcriptional regulator, LuxR family  26.79 
 
 
215 aa  69.7  0.00000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  27.27 
 
 
220 aa  69.7  0.00000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  26.76 
 
 
227 aa  69.3  0.00000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_007760  Adeh_2754  two component LuxR family transcriptional regulator  28.18 
 
 
215 aa  69.3  0.00000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.221671  n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  24.53 
 
 
217 aa  69.3  0.00000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  25.6 
 
 
219 aa  69.7  0.00000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  25.6 
 
 
219 aa  69.7  0.00000000004  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  24.06 
 
 
222 aa  69.7  0.00000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  25.6 
 
 
219 aa  69.7  0.00000000004  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  27.49 
 
 
222 aa  69.3  0.00000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_009620  Smed_4059  two component LuxR family transcriptional regulator  28.7 
 
 
212 aa  68.9  0.00000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.111025  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  26.29 
 
 
223 aa  68.9  0.00000000005  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_010816  BLD_0642  putative response regulator  26.98 
 
 
217 aa  69.3  0.00000000005  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  24.04 
 
 
215 aa  68.9  0.00000000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  27.62 
 
 
221 aa  68.9  0.00000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>