More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0504 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0504  transcriptional regulator, LuxR family  100 
 
 
217 aa  453  1e-127  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.0705101 
 
 
-
 
NC_013721  HMPREF0424_0169  transcriptional regulator, LuxR family  48.13 
 
 
246 aa  193  1e-48  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013721  HMPREF0424_1325  transcriptional regulator, LuxR family  30.99 
 
 
216 aa  115  6.9999999999999995e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_1646  response regulator of two component system  31.88 
 
 
234 aa  100  2e-20  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  31.75 
 
 
219 aa  92  5e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_010002  Daci_0377  two component LuxR family transcriptional regulator  31.25 
 
 
245 aa  91.7  8e-18  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  29.41 
 
 
215 aa  91.3  1e-17  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  33.33 
 
 
220 aa  88.2  1e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  30 
 
 
231 aa  87  2e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.162111 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  30.14 
 
 
215 aa  87.4  2e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  28.37 
 
 
228 aa  85.5  6e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  29.28 
 
 
213 aa  85.5  6e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  32.72 
 
 
224 aa  84.3  0.000000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  31.07 
 
 
214 aa  84.7  0.000000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  28.16 
 
 
216 aa  83.6  0.000000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  33.94 
 
 
224 aa  83.6  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  27.01 
 
 
211 aa  83.2  0.000000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  27.98 
 
 
211 aa  83.2  0.000000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  29.19 
 
 
215 aa  83.2  0.000000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  26.22 
 
 
234 aa  83.2  0.000000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  29.33 
 
 
236 aa  83.2  0.000000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  29.91 
 
 
209 aa  82.8  0.000000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  29.67 
 
 
215 aa  82  0.000000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  28.9 
 
 
225 aa  82  0.000000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  25.91 
 
 
213 aa  81.6  0.000000000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  29.38 
 
 
216 aa  81.6  0.000000000000009  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  29.19 
 
 
215 aa  81.3  0.00000000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  27.23 
 
 
228 aa  81.3  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  32.95 
 
 
237 aa  80.9  0.00000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  31.61 
 
 
208 aa  80.1  0.00000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  29.19 
 
 
215 aa  80.1  0.00000000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  30.54 
 
 
213 aa  80.5  0.00000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  29.19 
 
 
215 aa  79.7  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  29.19 
 
 
215 aa  79.7  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  29.19 
 
 
215 aa  79.7  0.00000000000003  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  29.19 
 
 
215 aa  79.7  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  29.19 
 
 
215 aa  79.7  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  29.81 
 
 
244 aa  79.7  0.00000000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  26.67 
 
 
209 aa  79.7  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  27.78 
 
 
224 aa  79.7  0.00000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  27.94 
 
 
213 aa  80.1  0.00000000000003  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  32.34 
 
 
212 aa  79.3  0.00000000000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  29.19 
 
 
215 aa  79.3  0.00000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0642  two component transcriptional regulator, LuxR family  28.99 
 
 
208 aa  79.3  0.00000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  28.05 
 
 
218 aa  79.3  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  30.23 
 
 
217 aa  79.3  0.00000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  26.63 
 
 
223 aa  79  0.00000000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  27.32 
 
 
207 aa  79  0.00000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  30.05 
 
 
213 aa  79  0.00000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.01 
 
 
230 aa  79  0.00000000000005  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  28.57 
 
 
222 aa  78.6  0.00000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  25.45 
 
 
213 aa  78.6  0.00000000000006  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  27.4 
 
 
230 aa  78.6  0.00000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_009953  Sare_3511  two component LuxR family transcriptional regulator  32.28 
 
 
221 aa  78.6  0.00000000000008  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0444635 
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  26.2 
 
 
228 aa  78.2  0.00000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_009380  Strop_3279  response regulator receiver  32.28 
 
 
221 aa  78.6  0.00000000000008  Salinispora tropica CNB-440  Bacteria  normal  0.97215  normal 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  32.37 
 
 
210 aa  78.2  0.00000000000009  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.82 
 
 
216 aa  78.2  0.00000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  27.14 
 
 
209 aa  77.8  0.0000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  27.14 
 
 
209 aa  77.8  0.0000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  27.14 
 
 
209 aa  77.8  0.0000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  27.14 
 
 
209 aa  77.8  0.0000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  27.14 
 
 
209 aa  77.8  0.0000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_008025  Dgeo_1626  two component LuxR family transcriptional regulator  30.65 
 
 
194 aa  77.8  0.0000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.947018 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  27.54 
 
 
219 aa  78.2  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  26.67 
 
 
244 aa  77.8  0.0000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  28.17 
 
 
213 aa  78.2  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  30.65 
 
 
220 aa  77  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  28.37 
 
 
218 aa  76.6  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  27.85 
 
 
219 aa  77.4  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  32.37 
 
 
210 aa  77.4  0.0000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  28.16 
 
 
209 aa  77  0.0000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1255  two component transcriptional regulator, LuxR family  27.57 
 
 
219 aa  77.4  0.0000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.490147  normal  0.40644 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  28.65 
 
 
225 aa  76.3  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  23.68 
 
 
208 aa  76.3  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  28.9 
 
 
208 aa  76.6  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  24.65 
 
 
226 aa  76.6  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0759  two component LuxR family transcriptional regulator  35 
 
 
217 aa  76.6  0.0000000000003  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  27.01 
 
 
222 aa  76.6  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  28.5 
 
 
225 aa  76.3  0.0000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  27.23 
 
 
224 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  28.02 
 
 
222 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  25.57 
 
 
226 aa  75.9  0.0000000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.67 
 
 
227 aa  75.9  0.0000000000005  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  32.76 
 
 
206 aa  75.9  0.0000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  29 
 
 
212 aa  75.9  0.0000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  27.87 
 
 
207 aa  75.5  0.0000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0485  two component LuxR family transcriptional regulator  27.4 
 
 
208 aa  75.5  0.0000000000006  Arthrobacter sp. FB24  Bacteria  normal  0.0855535  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  28.36 
 
 
207 aa  75.5  0.0000000000006  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  28.36 
 
 
207 aa  75.5  0.0000000000006  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.52 
 
 
222 aa  75.1  0.0000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  28.91 
 
 
223 aa  75.5  0.0000000000007  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  29.03 
 
 
228 aa  75.1  0.0000000000008  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  27.83 
 
 
213 aa  75.1  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>