More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0169 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0169  transcriptional regulator, LuxR family  100 
 
 
246 aa  514  1.0000000000000001e-145  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013721  HMPREF0424_0504  transcriptional regulator, LuxR family  48.13 
 
 
217 aa  193  2e-48  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.0705101 
 
 
-
 
NC_010816  BLD_1646  response regulator of two component system  30.99 
 
 
234 aa  100  2e-20  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1325  transcriptional regulator, LuxR family  28.97 
 
 
216 aa  89.4  5e-17  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009620  Smed_4059  two component LuxR family transcriptional regulator  26.21 
 
 
212 aa  82.8  0.000000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.111025  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  27.23 
 
 
228 aa  82  0.000000000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  28.04 
 
 
209 aa  79.7  0.00000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  28.16 
 
 
224 aa  79  0.00000000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  25.35 
 
 
216 aa  79  0.00000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  26.67 
 
 
208 aa  78.2  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  27.27 
 
 
217 aa  77.4  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2472  transcriptional regulator NarP  28.5 
 
 
215 aa  77  0.0000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2381  transcriptional regulator NarP  28.5 
 
 
215 aa  77  0.0000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  27.32 
 
 
225 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_011083  SeHA_C2486  transcriptional regulator NarP  27.57 
 
 
215 aa  75.9  0.0000000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.187807  normal  0.0115945 
 
 
-
 
NC_011080  SNSL254_A2430  transcriptional regulator NarP  27.57 
 
 
215 aa  75.9  0.0000000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.426027  normal  0.504703 
 
 
-
 
NC_011205  SeD_A2589  transcriptional regulator NarP  27.57 
 
 
215 aa  75.9  0.0000000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.167087 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  28.41 
 
 
212 aa  75.9  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  27.27 
 
 
216 aa  75.9  0.0000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0642  putative response regulator  26.7 
 
 
217 aa  75.5  0.0000000000007  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  25.23 
 
 
223 aa  75.1  0.0000000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.4 
 
 
225 aa  74.7  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  27.08 
 
 
219 aa  75.1  0.000000000001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.62 
 
 
227 aa  74.7  0.000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  25.82 
 
 
215 aa  74.7  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  26.42 
 
 
211 aa  75.1  0.000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  26.51 
 
 
224 aa  74.7  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_011205  SeD_A1296  response regulator  27.8 
 
 
218 aa  73.9  0.000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0547167  hitchhiker  0.00000564902 
 
 
-
 
NC_011149  SeAg_B1173  response regulator  27.8 
 
 
218 aa  73.9  0.000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.0000706228  n/a   
 
 
-
 
NC_011094  SeSA_A2103  response regulator  27.8 
 
 
218 aa  73.9  0.000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0532421  hitchhiker  0.00988724 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  25.84 
 
 
223 aa  74.3  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  27.78 
 
 
209 aa  73.6  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  28.99 
 
 
217 aa  74.3  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  26.73 
 
 
213 aa  73.9  0.000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1192  transcriptional regulator of LuxR family protein  29.14 
 
 
214 aa  73.9  0.000000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2162  response regulator  27.8 
 
 
218 aa  73.9  0.000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.284818  hitchhiker  0.000000016111 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  25.96 
 
 
227 aa  74.3  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  26.29 
 
 
207 aa  73.6  0.000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  25.57 
 
 
226 aa  73.2  0.000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  27.19 
 
 
214 aa  73.6  0.000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  26.32 
 
 
250 aa  73.6  0.000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  26.11 
 
 
226 aa  72.8  0.000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  26.57 
 
 
210 aa  73.2  0.000000000004  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  29.38 
 
 
212 aa  73.2  0.000000000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.996792 
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  26.07 
 
 
209 aa  72.8  0.000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  26.07 
 
 
209 aa  72.8  0.000000000004  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
CP001637  EcDH1_1732  two component transcriptional regulator, LuxR family  29.27 
 
 
218 aa  72.8  0.000000000005  Escherichia coli DH1  Bacteria  hitchhiker  0.00000000000321601  n/a   
 
 
-
 
NC_010498  EcSMS35_1269  response regulator  29.27 
 
 
218 aa  72.8  0.000000000005  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000584326  hitchhiker  0.00198125 
 
 
-
 
NC_006369  lpl2571  transmission activator LetA  26.78 
 
 
219 aa  72.8  0.000000000005  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  25.58 
 
 
234 aa  72.8  0.000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_007413  Ava_3851  two component LuxR family transcriptional regulator  24.89 
 
 
227 aa  72.8  0.000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1041  response regulator  29.27 
 
 
218 aa  72.8  0.000000000005  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000000644757  n/a   
 
 
-
 
NC_009801  EcE24377A_2147  response regulator  29.27 
 
 
218 aa  72.8  0.000000000005  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000040455  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  26.15 
 
 
230 aa  72.8  0.000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009800  EcHS_A2012  response regulator  29.27 
 
 
218 aa  72.4  0.000000000006  Escherichia coli HS  Bacteria  hitchhiker  0.000000000124814  n/a   
 
 
-
 
NC_011353  ECH74115_2686  response regulator  29.27 
 
 
218 aa  72.4  0.000000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000957663  normal  0.053055 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  26.07 
 
 
209 aa  72.4  0.000000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  26.79 
 
 
216 aa  72  0.000000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  27.4 
 
 
215 aa  72  0.000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0036  two component LuxR family transcriptional regulator  31.03 
 
 
221 aa  72  0.000000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0464925  n/a   
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  25.7 
 
 
227 aa  72  0.000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  24.52 
 
 
211 aa  72  0.000000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  26.36 
 
 
232 aa  71.2  0.00000000001  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  27.18 
 
 
274 aa  71.2  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1725  response regulator  27.45 
 
 
218 aa  71.2  0.00000000001  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000351159  normal 
 
 
-
 
NC_012669  Bcav_1611  two component transcriptional regulator, LuxR family  24.44 
 
 
208 aa  71.6  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal 
 
 
-
 
NC_009455  DehaBAV1_0409  two component LuxR family transcriptional regulator  26.36 
 
 
232 aa  71.2  0.00000000001  Dehalococcoides sp. BAV1  Bacteria  normal  0.135269  n/a   
 
 
-
 
NC_013552  DhcVS_374  DNA-binding response regulator, LuxR family  26.36 
 
 
232 aa  71.2  0.00000000001  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.0000120759  n/a   
 
 
-
 
CP001509  ECD_02120  DNA-binding response regulator in two-component regulatory system with NarQ or NarX  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1466  two component transcriptional regulator, LuxR family  27.98 
 
 
215 aa  71.2  0.00000000002  Escherichia coli DH1  Bacteria  normal  0.25338  n/a   
 
 
-
 
NC_012892  B21_02079  hypothetical protein  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2669  response regulator  28.08 
 
 
218 aa  70.9  0.00000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  decreased coverage  0.000700042  n/a   
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  27.85 
 
 
211 aa  70.5  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_010468  EcolC_1457  transcriptional regulator NarP  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.956805 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  24.31 
 
 
225 aa  70.5  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_010658  SbBS512_E0748  transcriptional regulator NarP  27.98 
 
 
215 aa  70.5  0.00000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.251733  n/a   
 
 
-
 
NC_008025  Dgeo_1626  two component LuxR family transcriptional regulator  26.14 
 
 
194 aa  70.9  0.00000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.947018 
 
 
-
 
NC_008228  Patl_2450  two component LuxR family transcriptional regulator  27.09 
 
 
214 aa  70.9  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00539256  n/a   
 
 
-
 
NC_011080  SNSL254_A2110  response regulator  27.32 
 
 
218 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.167551  hitchhiker  0.00000000000000238763 
 
 
-
 
NC_010498  EcSMS35_2341  transcriptional regulator NarP  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.277554 
 
 
-
 
NC_013421  Pecwa_1594  response regulator  29.61 
 
 
218 aa  70.9  0.00000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.518893  n/a   
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  26.16 
 
 
220 aa  70.5  0.00000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2331  transcriptional regulator NarP  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2492  transcriptional regulator NarP  27.98 
 
 
215 aa  70.5  0.00000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2324  DNA-binding response regulator  25.93 
 
 
217 aa  70.5  0.00000000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  27.48 
 
 
214 aa  70.1  0.00000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  28.57 
 
 
213 aa  70.1  0.00000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  26.56 
 
 
258 aa  70.5  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  26.32 
 
 
213 aa  70.5  0.00000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  30.37 
 
 
211 aa  70.1  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  26.09 
 
 
210 aa  69.7  0.00000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  25.81 
 
 
214 aa  69.7  0.00000000004  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  26.59 
 
 
223 aa  69.7  0.00000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_006274  BCZK3023  response regulator  25 
 
 
597 aa  69.3  0.00000000005  Bacillus cereus E33L  Bacteria  decreased coverage  0.000011368  n/a   
 
 
-
 
NC_011353  ECH74115_3330  transcriptional regulator NarP  27.73 
 
 
215 aa  69.3  0.00000000005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  23.3 
 
 
218 aa  69.7  0.00000000005  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  24.3 
 
 
262 aa  69.3  0.00000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_012880  Dd703_1450  response regulator  27.45 
 
 
218 aa  69.3  0.00000000005  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  27.75 
 
 
222 aa  69.3  0.00000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  25.23 
 
 
230 aa  69.3  0.00000000006  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
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