| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0504 |
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| Symbol | |
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| ID | 8709942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 549417 |
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| End bp | 550070 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482618 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003373745 |
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| Protein GI | 283782991 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0705101 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTA CTTATGCAAT TGTTGATAAT GACACGTTTG TATTGCGATA TATGCAACTT
CTTTTAAAAA GTCGTTTGCC TGAAAACTTT GTTTGTGCAT GGATGTGTTC TTCTGCAAAA
CAAGCTATTC ATCGTTGCGT TACAGAAAAT ACTCCTGACG TACTTTTAGT AGATATGTCA
ATGAGAGAAA TGAGTGGTGT TGATGTAATT AAAGCAATTC GCGAGCGCAA TAGCAATATT
GTTTTAATTG GCATTACTTC CTACATGCTG GATGAATACG TATTGCAAGT TGCTAAGTCG
GGTGGTCAAG CGCTAGTGCA TAAAGACAAT TTAGCAGACG TAGTTGCAGC TATCCAATCG
CGCGCAACGA GCTACGGGTG TCCAGAATTG CCACAATATA TTGACTATTT TCACACTCCG
CAAGAATCAT TTAATATGAT TTCTCAACTT CCGAAGACTT CAGTTTTGTC TCCTCAAGAA
TCGGAAATTA TGCGCTTGTG TAAACAGGGG TATTCGTCAA AAGAGATTGC AGATCAGCTT
AATGTGAAAG TTTCAACAGT CAACACGCAT TTACGGCGTA TTTATGGAAA ACTTCAAGTT
AAAAGTCGCA TGCAGGCGCT TGCTGTGCTC GCAAAATATT CACATGACAT ATAA
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| Protein sequence | MNTTYAIVDN DTFVLRYMQL LLKSRLPENF VCAWMCSSAK QAIHRCVTEN TPDVLLVDMS
MREMSGVDVI KAIRERNSNI VLIGITSYML DEYVLQVAKS GGQALVHKDN LADVVAAIQS
RATSYGCPEL PQYIDYFHTP QESFNMISQL PKTSVLSPQE SEIMRLCKQG YSSKEIADQL
NVKVSTVNTH LRRIYGKLQV KSRMQALAVL AKYSHDI
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