| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0169 |
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| Symbol | |
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| ID | 8709866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 190305 |
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| End bp | 191045 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482288 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003373433 |
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| Protein GI | 283782679 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAA CGTATGCAAT AGTAGATAAC GACCCACTAG TTTTAGCGGT TATGCGAAAC
GTGCTCAGCA AGCTTTTGCC AAGCGAGTAC GTGTGCAAAT GGTGCGTAAA ATCAGGCGTG
CAAGCTTTGA AATATTGCCA AGTAACAAAA ACGACTCCGG ATTATATTTT GATTGATATG
TCAATGAAAG ACATGTCTGG AGTAGAGGTA ATACGCGCAA TTCGCGAGAA AAACAATAAC
ATTATTTTAA TTGGTATGAC TTCGTATGAC TGTAGATCCT ACGCTTCGTC AGTAGCGCAA
GTTGGTGGGC AGGCAATGGT TGCTAAAGAC AATTTCAAAG GACTAGCAGA AGCTTTGCAA
TATTGCGATA ATCAGAAGGT GTATGGCTGC CGATGTGTTA GAGATGTTGC TTACGATTTT
GCTACTCCGC AAGAATCTTT TATTAGGCTT TCTAAATCAA GGTCGCGTAG CGTTTTGCCG
CCTCAAGAAC TAAAAATCAT GGATCTGCTC TCTAAAGGTT GCACAACAAA TCAGATTGCG
GCTCAACTTG GTCTTATGCC AAACACTATT AACACGCATA TTCATAGGAT TTACAAAAAA
TTGCATGTTT CTAACCGAGT GCAAGCAATA TCCGCGTTTG CTGCAATGCA AAATCGTGAG
CAAACTAGCA ATCTGCAATA TTTTAATAAT TCGCTTCAGA ATCATCCGAA TCCTTCTCAA
GAAACGGATA ACGCATGTTA A
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| Protein sequence | MQKTYAIVDN DPLVLAVMRN VLSKLLPSEY VCKWCVKSGV QALKYCQVTK TTPDYILIDM
SMKDMSGVEV IRAIREKNNN IILIGMTSYD CRSYASSVAQ VGGQAMVAKD NFKGLAEALQ
YCDNQKVYGC RCVRDVAYDF ATPQESFIRL SKSRSRSVLP PQELKIMDLL SKGCTTNQIA
AQLGLMPNTI NTHIHRIYKK LHVSNRVQAI SAFAAMQNRE QTSNLQYFNN SLQNHPNPSQ
ETDNAC
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