Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0454 |
Symbol | |
ID | 5207390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 570091 |
End bp | 570717 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640594074 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001274829 |
Protein GI | 148654624 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.698939 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00367889 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATCCCA TCCGTGTCGC ACTGGTCGAC GACCACAGCA TTGTCCGGCG CGGGTTAAGC GCCTACTTTG CCGCTCAACC CGACATCACC ATCGTCGGGG AGGCCGCCAG CGGCGAAGAG GCATTGCACC ACGCAGCAAC CTGGCAGGCG GATGTTATTG TGATGGACGT CCTCATGCCG GGCGGGATCG ACGGCATCGA AACCACCCGC CGCCTGAAGC GTCTCCTGCC GCAGACACAG ATCATCATCT TGAGCGGGTA CGCCGACGAC GCGCGGGTGA TCGGCGCATT GCGCGCAGGC GCCATCACCT ACGTGGAGAA GGACAGCCAG CCGGAACAGT TGCTCGAAGC GGTGCGCGGC GCCGCGCAGG GCAAAGCGAT CTTCGAGCCG GCGCTCATGC AGCGCATTCT CCAGGCGCAG ACGATGAGAA GCAGCGACGC GCTCACCGAA CGCGAAGGGG AGGTGCTGAA ACTGCTGGCG GAGGGATTGA CCAACGCCGA AATCGCCGCG CGCCTGTCGG TCGGCGAAGA GACGGTCAAG ACGCACGTCG CCAGCATCCT GCGTAAACTC GGACTGGCGC ACCGCACACA GGCGGCGATC TACGCCCTGC GGCATGGGTG GGTGTAG
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Protein sequence | MHPIRVALVD DHSIVRRGLS AYFAAQPDIT IVGEAASGEE ALHHAATWQA DVIVMDVLMP GGIDGIETTR RLKRLLPQTQ IIILSGYADD ARVIGALRAG AITYVEKDSQ PEQLLEAVRG AAQGKAIFEP ALMQRILQAQ TMRSSDALTE REGEVLKLLA EGLTNAEIAA RLSVGEETVK THVASILRKL GLAHRTQAAI YALRHGWV
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