More than 300 homologs were found in PanDaTox collection
for query gene Franean1_2268 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_2268  two component LuxR family transcriptional regulator  100 
 
 
250 aa  469  1.0000000000000001e-131  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00478344  normal  0.0390494 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  62.07 
 
 
220 aa  252  5.000000000000001e-66  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_013739  Cwoe_5656  two component transcriptional regulator, LuxR family  62.66 
 
 
222 aa  245  4.9999999999999997e-64  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0395  two component LuxR family transcriptional regulator  63.95 
 
 
217 aa  241  7e-63  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  57.2 
 
 
228 aa  238  8e-62  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1603  two component LuxR family transcriptional regulator  64.81 
 
 
245 aa  236  2e-61  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0252513 
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  60.26 
 
 
217 aa  235  5.0000000000000005e-61  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_013510  Tcur_2469  two component transcriptional regulator, LuxR family  57.87 
 
 
229 aa  232  4.0000000000000004e-60  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000889267  n/a   
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  58.37 
 
 
227 aa  227  1e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  56.07 
 
 
229 aa  226  3e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  52.87 
 
 
230 aa  220  9.999999999999999e-57  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_008699  Noca_1318  response regulator receiver  54.24 
 
 
225 aa  219  5e-56  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  55.17 
 
 
232 aa  219  5e-56  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  53.19 
 
 
226 aa  217  2e-55  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5068  two component transcriptional regulator, LuxR family  55.27 
 
 
220 aa  207  1e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.708369  normal 
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  54.51 
 
 
221 aa  206  2e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.01 
 
 
247 aa  205  5e-52  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_014151  Cfla_0822  two component transcriptional regulator, LuxR family  51.43 
 
 
229 aa  205  7e-52  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  50.85 
 
 
215 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  45.49 
 
 
230 aa  192  6e-48  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.26 
 
 
222 aa  191  7e-48  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  49.36 
 
 
212 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  49.79 
 
 
215 aa  185  5e-46  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013172  Bfae_02400  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.35 
 
 
255 aa  185  6e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2730  response regulator receiver  46.98 
 
 
216 aa  184  1.0000000000000001e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.776601  n/a   
 
 
-
 
NC_012669  Bcav_2689  two component transcriptional regulator, LuxR family  51.27 
 
 
223 aa  182  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.364406  normal  0.346923 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  47.21 
 
 
214 aa  181  1e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3314  two component transcriptional regulator, LuxR family  50.85 
 
 
222 aa  181  1e-44  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00833126  n/a   
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  45.49 
 
 
219 aa  180  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  48.73 
 
 
228 aa  179  2.9999999999999997e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013947  Snas_1883  two component transcriptional regulator, LuxR family  50.85 
 
 
215 aa  179  2.9999999999999997e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0780809 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  49.15 
 
 
241 aa  176  2e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  45.49 
 
 
223 aa  176  4e-43  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_012669  Bcav_0296  two component transcriptional regulator, LuxR family  50.68 
 
 
198 aa  176  4e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.1736  normal 
 
 
-
 
NC_013739  Cwoe_0366  two component transcriptional regulator, LuxR family  49.79 
 
 
220 aa  174  9.999999999999999e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.0587069  normal  0.203995 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  44.72 
 
 
225 aa  174  9.999999999999999e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  47.84 
 
 
220 aa  174  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  44.77 
 
 
221 aa  174  9.999999999999999e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  47.64 
 
 
219 aa  174  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  43.1 
 
 
234 aa  172  5.999999999999999e-42  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  45.53 
 
 
222 aa  171  7.999999999999999e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  44.12 
 
 
213 aa  171  1e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3669  response regulator receiver protein  48.07 
 
 
213 aa  170  2e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  47.01 
 
 
220 aa  170  2e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  46.15 
 
 
221 aa  169  3e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  48.51 
 
 
222 aa  169  3e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  40.51 
 
 
239 aa  169  5e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  40.89 
 
 
250 aa  168  8e-41  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.68 
 
 
230 aa  168  9e-41  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  45.73 
 
 
222 aa  167  1e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  43.83 
 
 
221 aa  167  1e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  45.3 
 
 
226 aa  167  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  42.55 
 
 
215 aa  167  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  45.53 
 
 
222 aa  167  2e-40  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  43.48 
 
 
213 aa  167  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  46.58 
 
 
226 aa  166  2.9999999999999998e-40  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  42.98 
 
 
224 aa  166  2.9999999999999998e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  43.7 
 
 
214 aa  166  2.9999999999999998e-40  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  43.88 
 
 
226 aa  166  2.9999999999999998e-40  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  45.92 
 
 
215 aa  165  5e-40  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  41.45 
 
 
220 aa  166  5e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.34 
 
 
225 aa  165  6.9999999999999995e-40  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  43.78 
 
 
225 aa  165  6.9999999999999995e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.8 
 
 
244 aa  165  6.9999999999999995e-40  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  43.85 
 
 
241 aa  164  8e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  44.21 
 
 
224 aa  164  8e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  42.13 
 
 
225 aa  165  8e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  43.29 
 
 
218 aa  164  1.0000000000000001e-39  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  43.83 
 
 
234 aa  164  1.0000000000000001e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1960  two component transcriptional regulator, LuxR family  45.73 
 
 
216 aa  164  1.0000000000000001e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.49 
 
 
229 aa  163  2.0000000000000002e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  45.41 
 
 
219 aa  163  2.0000000000000002e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  41.88 
 
 
225 aa  164  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40.16 
 
 
239 aa  163  3e-39  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  47.06 
 
 
225 aa  162  4.0000000000000004e-39  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  44.44 
 
 
225 aa  162  4.0000000000000004e-39  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  43.29 
 
 
227 aa  162  4.0000000000000004e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  46.29 
 
 
213 aa  162  4.0000000000000004e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  44.16 
 
 
233 aa  162  4.0000000000000004e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  42.92 
 
 
235 aa  162  6e-39  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_013521  Sked_25620  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.22 
 
 
219 aa  162  7e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.263807 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  40.52 
 
 
218 aa  161  8.000000000000001e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  43.64 
 
 
227 aa  161  8.000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  40.57 
 
 
234 aa  161  1e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  41.7 
 
 
226 aa  160  1e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  44.68 
 
 
232 aa  160  2e-38  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  43.86 
 
 
219 aa  160  2e-38  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  40.34 
 
 
223 aa  160  2e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  42.45 
 
 
228 aa  160  2e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  39.27 
 
 
231 aa  159  3e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  41.67 
 
 
230 aa  159  3e-38  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  41.18 
 
 
228 aa  159  4e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  43.53 
 
 
214 aa  159  4e-38  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  43.41 
 
 
239 aa  159  4e-38  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  42.67 
 
 
220 aa  159  4e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  43.67 
 
 
219 aa  159  5e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  43.35 
 
 
225 aa  159  5e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  44.44 
 
 
221 aa  159  5e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  40.51 
 
 
231 aa  159  5e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  46.06 
 
 
244 aa  159  5e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
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