More than 300 homologs were found in PanDaTox collection
for query gene Cpin_6406 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_6406  two component transcriptional regulator, LytTR family  100 
 
 
252 aa  519  1e-146  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5335  two component transcriptional regulator, LytTR family  46.46 
 
 
253 aa  237  2e-61  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.709567 
 
 
-
 
NC_013132  Cpin_6060  two component transcriptional regulator, LytTR family  43.08 
 
 
253 aa  216  4e-55  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4001  LytTR family two component transcriptional regulator  41.8 
 
 
255 aa  207  1e-52  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7151  two component transcriptional regulator, LytTR family  42.29 
 
 
249 aa  202  3e-51  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1475  two component transcriptional regulator, LytTR family  41.41 
 
 
255 aa  200  1.9999999999999998e-50  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.059663 
 
 
-
 
NC_013132  Cpin_2661  two component transcriptional regulator, LytTR family  38.91 
 
 
252 aa  197  1.0000000000000001e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6676  two component transcriptional regulator, LytTR family  38.65 
 
 
253 aa  187  2e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0758  two component transcriptional regulator, LytTR family  39.84 
 
 
256 aa  184  9e-46  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.649382 
 
 
-
 
NC_013132  Cpin_5824  two component transcriptional regulator, LytTR family  39.84 
 
 
258 aa  180  2e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0489181 
 
 
-
 
NC_013037  Dfer_5312  two component transcriptional regulator, LytTR family  39.53 
 
 
255 aa  174  9.999999999999999e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0977362 
 
 
-
 
NC_013730  Slin_2091  two component transcriptional regulator, LytTR family  36.4 
 
 
259 aa  173  1.9999999999999998e-42  Spirosoma linguale DSM 74  Bacteria  normal  0.0504817  normal  0.478744 
 
 
-
 
NC_013730  Slin_2775  two component transcriptional regulator, LytTR family  33.98 
 
 
258 aa  157  1e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3726  two component transcriptional regulator, LytTR family  36.8 
 
 
252 aa  155  9e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.304835 
 
 
-
 
NC_013132  Cpin_0271  two component transcriptional regulator, LytTR family  33.33 
 
 
256 aa  153  2e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3229  LytTR family two component transcriptional regulator  34 
 
 
250 aa  153  2e-36  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2354  two component transcriptional regulator, LytTR family  36.22 
 
 
256 aa  151  1e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0307  two component transcriptional regulator, LytTR family  33.73 
 
 
250 aa  150  2e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2868  two component transcriptional regulator, LytTR family  35.14 
 
 
259 aa  149  3e-35  Spirosoma linguale DSM 74  Bacteria  normal  0.0154807  normal 
 
 
-
 
NC_013037  Dfer_2256  two component transcriptional regulator, LytTR family  32.58 
 
 
262 aa  146  3e-34  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.596319 
 
 
-
 
NC_013037  Dfer_1317  two component transcriptional regulator, LytTR family  31.56 
 
 
261 aa  144  1e-33  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2789  response regulator receiver  32.94 
 
 
254 aa  142  4e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  35.8 
 
 
255 aa  142  4e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5405  two component transcriptional regulator, LytTR family  32.44 
 
 
243 aa  138  1e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.379459 
 
 
-
 
NC_013037  Dfer_1444  two component transcriptional regulator, LytTR family  33.2 
 
 
256 aa  137  2e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.317386 
 
 
-
 
NC_014230  CA2559_12408  two-component system response regulator  33.73 
 
 
251 aa  134  1.9999999999999998e-30  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.401855  n/a   
 
 
-
 
NC_013132  Cpin_6102  two component transcriptional regulator, LytTR family  33.73 
 
 
252 aa  132  6.999999999999999e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1794  two component transcriptional regulator, LytTR family  31.92 
 
 
260 aa  131  9e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0600  two component transcriptional regulator, LytTR family  29.43 
 
 
265 aa  128  9.000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.315052 
 
 
-
 
NC_013037  Dfer_0800  two component transcriptional regulator, LytTR family  31.6 
 
 
251 aa  127  1.0000000000000001e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1836  two component transcriptional regulator, LytTR family  35.38 
 
 
258 aa  127  2.0000000000000002e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.467017 
 
 
-
 
NC_013037  Dfer_0804  two component transcriptional regulator, LytTR family  32.27 
 
 
251 aa  125  5e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4674  LytTR family two component transcriptional regulator  33.46 
 
 
254 aa  125  8.000000000000001e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  0.124147  n/a   
 
 
-
 
NC_013061  Phep_2439  LytTr DNA-binding region  31.76 
 
 
255 aa  124  1e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  0.697869  normal 
 
 
-
 
NC_013730  Slin_0837  response regulator receiver protein  50 
 
 
153 aa  113  2.0000000000000002e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.925678  normal 
 
 
-
 
NC_007954  Sden_1209  LytTr DNA-binding region  29.01 
 
 
240 aa  112  6e-24  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0858  response regulator receiver protein  40 
 
 
141 aa  92.4  6e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.748894  normal 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  25.64 
 
 
260 aa  90.5  2e-17  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_009253  Dred_2957  response regulator receiver protein  33.02 
 
 
236 aa  90.1  3e-17  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00954821  n/a   
 
 
-
 
NC_009511  Swit_2974  LytTR family two component transcriptional regulator  27.86 
 
 
266 aa  85.9  6e-16  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.318128 
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  26.52 
 
 
262 aa  85.1  9e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  28.98 
 
 
242 aa  84.3  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  27.13 
 
 
275 aa  84.3  0.000000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  26.78 
 
 
260 aa  83.2  0.000000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0715  two component transcriptional regulator, LytTR family  31.3 
 
 
245 aa  82.8  0.000000000000004  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00500528  n/a   
 
 
-
 
NC_013132  Cpin_2084  response regulator receiver protein  39.09 
 
 
202 aa  83.2  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2397  two component transcriptional regulator, LytTR family  26.52 
 
 
261 aa  82.8  0.000000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  29.5 
 
 
265 aa  82.4  0.000000000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  29.28 
 
 
254 aa  82  0.000000000000008  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1224  two component transcriptional regulator, LytTR family  30.56 
 
 
260 aa  81.6  0.00000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0890711 
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  26.29 
 
 
265 aa  80.9  0.00000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2356  response regulator receiver protein  28.51 
 
 
257 aa  80.1  0.00000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.325932  normal  0.149931 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  27.56 
 
 
249 aa  80.1  0.00000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0979  LytTR family two component transcriptional regulator  26.88 
 
 
242 aa  80.1  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0238694 
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  27.39 
 
 
258 aa  80.5  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  26.69 
 
 
244 aa  79  0.00000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  25.97 
 
 
251 aa  79.3  0.00000000000006  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0617  two component transcriptional regulator, LytTR family  27.75 
 
 
243 aa  79  0.00000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.23864 
 
 
-
 
NC_012880  Dd703_2357  two component transcriptional regulator, LytTR family  25.1 
 
 
244 aa  79  0.00000000000007  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  27.68 
 
 
246 aa  79  0.00000000000007  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3976  LytTR family two component transcriptional regulator  26.46 
 
 
247 aa  78.6  0.00000000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0063  response regulator receiver:LytTr DNA-binding region  26.58 
 
 
248 aa  78.6  0.00000000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  27.97 
 
 
257 aa  77.8  0.0000000000001  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  28.64 
 
 
266 aa  78.2  0.0000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  27.98 
 
 
255 aa  78.6  0.0000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_007969  Pcryo_0765  LytR/AlgR family transcriptional regulator  26.84 
 
 
247 aa  77.8  0.0000000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  0.584976  normal  0.255142 
 
 
-
 
NC_007954  Sden_0847  response regulator receiver  26.98 
 
 
232 aa  77  0.0000000000003  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  27.31 
 
 
246 aa  76.3  0.0000000000004  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_008048  Sala_2673  response regulator receiver protein  28.41 
 
 
268 aa  76.3  0.0000000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587227  normal  0.606797 
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  27.53 
 
 
245 aa  75.9  0.0000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  27.73 
 
 
237 aa  75.9  0.0000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_009656  PSPA7_6007  alginate biosynthesis regulatory protein AlgR  26.94 
 
 
248 aa  74.7  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_004578  PSPTO_0127  alginate biosynthesis regulatory protein AlgR  26.58 
 
 
248 aa  73.9  0.000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2093  putative two-component response-regulatory protein YehT  26.09 
 
 
237 aa  73.9  0.000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3341  putative two-component response-regulatory protein YehT  26.64 
 
 
244 aa  74.3  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.798853 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  26.67 
 
 
237 aa  73.9  0.000000000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0059  two component transcriptional regulator, LytTR family  27.49 
 
 
243 aa  73.6  0.000000000003  Shewanella baltica OS223  Bacteria  normal  0.182784  normal 
 
 
-
 
NC_007650  BTH_II1400  response regulator  28.27 
 
 
243 aa  73.6  0.000000000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  37.39 
 
 
317 aa  73.9  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_008463  PA14_69470  alginate biosynthesis regulatory protein AlgR  26.48 
 
 
248 aa  73.6  0.000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.184834  normal 
 
 
-
 
NC_009439  Pmen_0279  two-component response regulator AlgR  27.03 
 
 
248 aa  73.6  0.000000000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0904  LytTR family two component transcriptional regulator  25.34 
 
 
243 aa  73.6  0.000000000003  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  27.47 
 
 
246 aa  73.2  0.000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1879  two component transcriptional regulator, LytTR family  25.78 
 
 
249 aa  73.2  0.000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.247337  n/a   
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  27.47 
 
 
246 aa  72.8  0.000000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2171  two component transcriptional regulator, LytTR family  26.56 
 
 
249 aa  72.8  0.000000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0294549  n/a   
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  25.23 
 
 
257 aa  72.4  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS5295  response regulator LytR  27.75 
 
 
246 aa  72.8  0.000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  27.75 
 
 
246 aa  72.8  0.000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  27.75 
 
 
246 aa  72.8  0.000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  27.75 
 
 
246 aa  72.8  0.000000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  27.56 
 
 
255 aa  72.4  0.000000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  25.88 
 
 
238 aa  72.4  0.000000000007  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0060  LytTR family two component transcriptional regulator  27.49 
 
 
243 aa  72  0.000000000008  Shewanella baltica OS195  Bacteria  normal  0.0478076  hitchhiker  0.000497336 
 
 
-
 
NC_009052  Sbal_4299  LytTR family two component transcriptional regulator  27.49 
 
 
243 aa  72  0.000000000008  Shewanella baltica OS155  Bacteria  decreased coverage  0.000001386  n/a   
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  25.4 
 
 
246 aa  72  0.000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_006274  BCZK5137  response regulator  27.75 
 
 
246 aa  72  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  36.28 
 
 
245 aa  71.6  0.00000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_008321  Shewmr4_0057  response regulator receiver protein  27.09 
 
 
243 aa  71.6  0.00000000001  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000048418  decreased coverage  0.0000000648872 
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  28.57 
 
 
246 aa  71.6  0.00000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>