More than 300 homologs were found in PanDaTox collection
for query gene Cpin_3142 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3142  short-chain dehydrogenase/reductase SDR  100 
 
 
307 aa  634    Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10208  probable oxidoreductase  26.73 
 
 
271 aa  85.9  8e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0291  2-deoxy-D-gluconate 3-dehydrogenase  42.61 
 
 
286 aa  85.5  0.000000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1016  short-chain dehydrogenase/reductase SDR  38.52 
 
 
324 aa  84  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.010862 
 
 
-
 
NC_007516  Syncc9605_1268  chlorophyll synthase / NADPH-protochlorophyllide oxidoreductase  29.55 
 
 
328 aa  82.4  0.000000000000008  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1798  short-chain dehydrogenase/reductase SDR  30.99 
 
 
269 aa  82  0.00000000000001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.278197 
 
 
-
 
NC_012856  Rpic12D_0112  short-chain dehydrogenase/reductase SDR  43.75 
 
 
295 aa  81.3  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.245177  normal 
 
 
-
 
NC_007492  Pfl01_3946  Short-chain dehydrogenase/reductase SDR  40 
 
 
289 aa  80.9  0.00000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1138  putative dehydrogenase  32.48 
 
 
329 aa  80.5  0.00000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.530654  normal 
 
 
-
 
NC_013037  Dfer_0839  short-chain dehydrogenase/reductase SDR  33.79 
 
 
304 aa  80.5  0.00000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.177477  normal  0.189843 
 
 
-
 
NC_010831  Cphamn1_0763  short chain dehydrogenase  34.85 
 
 
316 aa  79.3  0.00000000000007  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.920637  normal  0.460734 
 
 
-
 
NC_010682  Rpic_0105  short-chain dehydrogenase/reductase SDR  42.86 
 
 
295 aa  78.6  0.0000000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0325  short-chain dehydrogenase/reductase SDR  42.73 
 
 
304 aa  78.2  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0860  short-chain dehydrogenase/reductase SDR  36.67 
 
 
287 aa  77.8  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.943731  normal  0.246629 
 
 
-
 
NC_014210  Ndas_1947  short-chain dehydrogenase/reductase SDR  40.71 
 
 
308 aa  76.6  0.0000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.156536  normal  0.0102569 
 
 
-
 
NC_007435  BURPS1710b_A1148  short chain dehydrogenase/reductase family oxidoreductase  39.13 
 
 
323 aa  75.9  0.0000000000008  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2803  short-chain dehydrogenase/reductase SDR  39.02 
 
 
288 aa  75.9  0.0000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.670481  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2773  short chain dehydrogenase/reductase family oxidoreductase  39.13 
 
 
286 aa  75.9  0.0000000000009  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2928  short chain dehydrogenase/reductase family oxidoreductase  39.13 
 
 
286 aa  75.9  0.0000000000009  Burkholderia pseudomallei 668  Bacteria  normal  0.458345  n/a   
 
 
-
 
NC_009675  Anae109_1583  short-chain dehydrogenase/reductase SDR  27.3 
 
 
349 aa  75.5  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.216927  normal  0.0361789 
 
 
-
 
NC_007950  Bpro_5261  short-chain dehydrogenase/reductase SDR  40.71 
 
 
298 aa  75.5  0.000000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1140  short-chain dehydrogenase/reductase SDR  28.84 
 
 
277 aa  74.3  0.000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0331463  normal  0.0268601 
 
 
-
 
NC_008820  P9303_13231  putative light-dependent protochlorophyllide oxido-reductase  29.6 
 
 
348 aa  75.1  0.000000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.379961 
 
 
-
 
NC_007516  Syncc9605_2564  short-chain dehydrogenase/reductase  29.44 
 
 
302 aa  73.9  0.000000000003  Synechococcus sp. CC9605  Bacteria  normal  0.554832  normal 
 
 
-
 
NC_008228  Patl_1354  short-chain dehydrogenase/reductase SDR  26.67 
 
 
270 aa  73.9  0.000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.02424  n/a   
 
 
-
 
NC_008819  NATL1_06971  putative light-dependent protochlorophyllide oxido-reductase  28.71 
 
 
340 aa  73.9  0.000000000003  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.938537  normal 
 
 
-
 
NC_013441  Gbro_4327  short-chain dehydrogenase/reductase SDR  38.17 
 
 
312 aa  73.6  0.000000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_0074  putative light-dependent protochlorophyllide oxido-reductase  28.71 
 
 
340 aa  73.6  0.000000000004  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.120468  n/a   
 
 
-
 
NC_007908  Rfer_3507  short-chain dehydrogenase/reductase SDR  39.29 
 
 
294 aa  73.6  0.000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4205  short chain dehydrogenase  31.61 
 
 
249 aa  73.6  0.000000000004  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2120  short-chain dehydrogenase/reductase SDR  39.13 
 
 
313 aa  73.6  0.000000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.289594 
 
 
-
 
NC_014158  Tpau_3608  Male sterility domain protein  33.6 
 
 
637 aa  73.2  0.000000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.619777  n/a   
 
 
-
 
NC_013510  Tcur_1813  short-chain dehydrogenase/reductase SDR  39.02 
 
 
301 aa  72.8  0.000000000006  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000491998  n/a   
 
 
-
 
NC_008146  Mmcs_2625  short-chain dehydrogenase/reductase SDR  32.43 
 
 
248 aa  73.2  0.000000000006  Mycobacterium sp. MCS  Bacteria  normal  0.627882  n/a   
 
 
-
 
NC_009077  Mjls_2654  short-chain dehydrogenase/reductase SDR  32.43 
 
 
248 aa  73.2  0.000000000006  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_2669  short-chain dehydrogenase/reductase SDR  32.43 
 
 
248 aa  73.2  0.000000000006  Mycobacterium sp. KMS  Bacteria  normal  0.412658  normal  0.910239 
 
 
-
 
NC_009921  Franean1_0077  short-chain dehydrogenase/reductase SDR  25.36 
 
 
271 aa  72.8  0.000000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009051  Memar_1150  short-chain dehydrogenase/reductase SDR  27.65 
 
 
281 aa  72.8  0.000000000008  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2082  short-chain dehydrogenase/reductase SDR  34.24 
 
 
318 aa  72  0.00000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.613431 
 
 
-
 
NC_008347  Mmar10_1846  short-chain dehydrogenase/reductase SDR  34.03 
 
 
287 aa  72  0.00000000001  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1232  short-chain dehydrogenase/reductase SDR  33.07 
 
 
305 aa  72.4  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  0.623354  n/a   
 
 
-
 
NC_013730  Slin_3321  short-chain dehydrogenase/reductase SDR  31.45 
 
 
351 aa  71.2  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.358421  normal 
 
 
-
 
NC_009523  RoseRS_4028  short-chain dehydrogenase/reductase SDR  28.89 
 
 
292 aa  71.2  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.251041  normal 
 
 
-
 
NC_013440  Hoch_4302  short-chain dehydrogenase/reductase SDR  32.03 
 
 
265 aa  71.6  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.729821 
 
 
-
 
NC_009052  Sbal_3370  short-chain dehydrogenase/reductase SDR  29.28 
 
 
248 aa  71.6  0.00000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  32.39 
 
 
260 aa  70.9  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5759  short-chain dehydrogenase/reductase SDR  41.3 
 
 
310 aa  70.9  0.00000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0307926 
 
 
-
 
NC_011365  Gdia_1049  short-chain dehydrogenase/reductase SDR  31.39 
 
 
326 aa  70.9  0.00000000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0676  short-chain dehydrogenase/reductase SDR  34.62 
 
 
254 aa  70.5  0.00000000004  Frankia sp. CcI3  Bacteria  hitchhiker  0.00917144  normal  0.0792915 
 
 
-
 
NC_007963  Csal_1129  short-chain dehydrogenase/reductase SDR  31.03 
 
 
254 aa  70.1  0.00000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.40266  n/a   
 
 
-
 
NC_013205  Aaci_0069  short-chain dehydrogenase/reductase SDR  35.57 
 
 
310 aa  70.1  0.00000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.0206248  n/a   
 
 
-
 
NC_009425  Ent638_4222  short-chain dehydrogenase/reductase SDR  37.1 
 
 
242 aa  70.1  0.00000000005  Enterobacter sp. 638  Bacteria  normal  0.186526  normal 
 
 
-
 
NC_011672  PHATRDRAFT_4266  predicted protein  24.73 
 
 
260 aa  70.1  0.00000000005  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.0181286  n/a   
 
 
-
 
NC_008699  Noca_4434  short-chain dehydrogenase/reductase SDR  38.79 
 
 
316 aa  70.1  0.00000000005  Nocardioides sp. JS614  Bacteria  normal  0.79228  n/a   
 
 
-
 
NC_008009  Acid345_2206  short-chain dehydrogenase/reductase SDR  36.64 
 
 
261 aa  69.7  0.00000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0587036  normal  0.882414 
 
 
-
 
NC_011729  PCC7424_4969  protochlorophyllide oxidoreductase  25.26 
 
 
325 aa  69.3  0.00000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013757  Gobs_1718  short-chain dehydrogenase/reductase SDR  30.84 
 
 
253 aa  69.3  0.00000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3847  short-chain dehydrogenase/reductase SDR  35.97 
 
 
247 aa  68.6  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0744  short-chain dehydrogenase/reductase SDR  31.91 
 
 
319 aa  68.2  0.0000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24495 
 
 
-
 
NC_009565  TBFG_13425  short chain dehydrogenase  33.09 
 
 
650 aa  68.6  0.0000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3830  short-chain dehydrogenase/reductase SDR  26.3 
 
 
285 aa  68.6  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000468983  n/a   
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  36.17 
 
 
249 aa  68.6  0.0000000001  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
NC_011669  PHATRDRAFT_32314  predicted protein  33.56 
 
 
388 aa  68.6  0.0000000001  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.20432  n/a   
 
 
-
 
NC_011666  Msil_0412  short-chain dehydrogenase/reductase SDR  33.82 
 
 
249 aa  68.9  0.0000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.956154 
 
 
-
 
NC_003296  RS05496  putative oxidoreductase protein  26.69 
 
 
306 aa  68.2  0.0000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.58284 
 
 
-
 
NC_009524  PsycPRwf_1379  short-chain dehydrogenase/reductase SDR  31.85 
 
 
292 aa  68.2  0.0000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0182353  hitchhiker  0.000251864 
 
 
-
 
NC_007348  Reut_B5205  Short-chain dehydrogenase/reductase SDR  30.6 
 
 
294 aa  68.2  0.0000000002  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00959428  n/a   
 
 
-
 
NC_007517  Gmet_2194  Short-chain dehydrogenase/reductase SDR  30.81 
 
 
255 aa  67.8  0.0000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000131904  normal  0.0140674 
 
 
-
 
NC_010581  Bind_0032  short chain dehydrogenase  39.69 
 
 
300 aa  68.2  0.0000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.249754  normal 
 
 
-
 
NC_013922  Nmag_2915  short-chain dehydrogenase/reductase SDR  30.34 
 
 
326 aa  68.2  0.0000000002  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  33.33 
 
 
255 aa  68.2  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4584  short-chain dehydrogenase/reductase SDR  37.23 
 
 
338 aa  68.2  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.200528  normal  0.701446 
 
 
-
 
NC_009565  TBFG_10309  dehydrogenase/reductase  26.21 
 
 
302 aa  67.4  0.0000000003  Mycobacterium tuberculosis F11  Bacteria  normal  0.0691061  normal  0.130665 
 
 
-
 
NC_011365  Gdia_1943  short-chain dehydrogenase/reductase SDR  36.81 
 
 
320 aa  67  0.0000000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.756699  normal 
 
 
-
 
NC_009664  Krad_2739  short-chain dehydrogenase/reductase SDR  30.8 
 
 
277 aa  67.4  0.0000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4550  Male sterility domain protein  33.07 
 
 
659 aa  67  0.0000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.838393 
 
 
-
 
NC_009338  Mflv_0026  short chain dehydrogenase  34.96 
 
 
319 aa  67.4  0.0000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.122051  normal  0.68068 
 
 
-
 
NC_013161  Cyan8802_3774  protochlorophyllide oxidoreductase  26.06 
 
 
320 aa  67.4  0.0000000003  Cyanothece sp. PCC 8802  Bacteria  normal  0.0260841  normal 
 
 
-
 
NC_011726  PCC8801_3722  protochlorophyllide oxidoreductase  26.06 
 
 
320 aa  67.4  0.0000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_1744  short-chain dehydrogenase/reductase SDR  33.57 
 
 
258 aa  67.4  0.0000000003  Clostridium phytofermentans ISDg  Bacteria  normal  0.084821  n/a   
 
 
-
 
NC_007492  Pfl01_2783  Short-chain dehydrogenase/reductase SDR  36.96 
 
 
327 aa  67  0.0000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009355  OSTLU_28998  predicted protein  32.64 
 
 
283 aa  67  0.0000000004  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.275972  n/a   
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  35.77 
 
 
245 aa  67  0.0000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0143  short chain dehydrogenase  37.31 
 
 
303 aa  66.6  0.0000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7084  gluconate 5-dehydrogenase  33.33 
 
 
255 aa  67  0.0000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1299  fatty acyl-CoA reductase protein  34.07 
 
 
295 aa  66.6  0.0000000005  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1065  short-chain dehydrogenase/reductase SDR  35.57 
 
 
312 aa  66.6  0.0000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.334573  normal  0.72801 
 
 
-
 
NC_010506  Swoo_0118  short-chain dehydrogenase/reductase SDR  35.29 
 
 
268 aa  66.6  0.0000000005  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0722  short-chain dehydrogenase/reductase SDR  25.83 
 
 
284 aa  66.6  0.0000000005  Salinispora tropica CNB-440  Bacteria  normal  normal  0.182055 
 
 
-
 
NC_009441  Fjoh_4926  short-chain dehydrogenase/reductase SDR  29.38 
 
 
250 aa  66.6  0.0000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0321  short-chain dehydrogenase/reductase SDR  27.32 
 
 
290 aa  66.6  0.0000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2779  short-chain dehydrogenase/reductase SDR  33.33 
 
 
292 aa  66.2  0.0000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0384845  normal  0.402092 
 
 
-
 
NC_007969  Pcryo_1079  short-chain dehydrogenase/reductase SDR  32.59 
 
 
295 aa  66.2  0.0000000006  Psychrobacter cryohalolentis K5  Bacteria  normal  0.366872  normal  0.186845 
 
 
-
 
NC_008146  Mmcs_0596  short chain dehydrogenase  42.54 
 
 
306 aa  66.2  0.0000000006  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0852  short-chain dehydrogenase/reductase SDR  31.65 
 
 
307 aa  66.6  0.0000000006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0401995  n/a   
 
 
-
 
NC_008705  Mkms_0609  short chain dehydrogenase  42.54 
 
 
306 aa  66.2  0.0000000006  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1368  short-chain dehydrogenase/reductase SDR  30.88 
 
 
285 aa  66.2  0.0000000007  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.00277313  n/a   
 
 
-
 
NC_008544  Bcen2424_6461  short-chain dehydrogenase/reductase SDR  30.88 
 
 
285 aa  66.2  0.0000000007  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12290  short chain dehydrogenase  36.24 
 
 
317 aa  65.9  0.0000000008  Mycobacterium tuberculosis F11  Bacteria  normal  0.521938  normal 
 
 
-
 
NC_013926  Aboo_1276  short-chain dehydrogenase/reductase SDR  33.33 
 
 
237 aa  65.9  0.0000000008  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
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