| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0321 |
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| Symbol | |
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| ID | 4173143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 374405 |
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| End bp | 375277 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638053320 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_659907 |
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| Protein GI | 109896652 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTATC AATCTTGCTT AAGGGCAAAC AGCTTTGCTG GGCAAACATA CGTCGTCACG
GGCGGCGGCA GTGGAATTGG TCGCTGCACC GCCCATGAAT TGGCAAGTTT AGGGGCGAGC
GTAGTTCTGC TTGGGCGCAA TCTAGAAAAA TTGCAGCGCA CCAGTAATGA GATCATCGAT
GATGGCGGAA GTGCAGACTA TTTCGCTCTG GATATCCGCG ATGAAGAGCA GGTCATCACC
ACTGTAAGCG CCATTTTAAA AGCCCATGAG CATGTGCATG GCTTGTTGAA TATTGCTGGA
GGGCAATTTC GCGCGCCACT AGAGGCCATC AGCAAAAAAG GCTTTGAAAG TGTGGTGCAA
ACCAACCTTG TGGGCGGCTT TTTGATGGCC AGAGAGCTGT TCAAACAGCA CTTCAAAGCC
CATGGCGGCA GCATAGTCAA TATCACCGCG GATAACAAAA ACGGCATGCC GGGTATGGGG
CACTCTGGTG CTGCCCGCGC AGGTGTCGAA AACCTCACTA AAACGGCCGC GTGGGAATGG
GGCCGATATG GCGTGCGAGT GAATACGGTG GCACCGGGTT GGGTGGCCTC TTCTGGCCTT
GATACCTACC CCCAAGAGAT GCAGGCCGCG ATAAACAATC TAAAATATGC AGTCCCCCTA
GGGCGTATTG CTAGCGAAGC AGAAATCTCT GCGCTGATTT GTTTTTTAAT GAGCCCTGGA
GCCAACTTTA TCAGTGGCCA ATCTATGTGG GTGGACGGCG CAGCCAGTAT GGGCTCAGCC
CCTGCACTTG CACCACTTGG CCAAACCGCA CCTGTTAACA GCACAACGTG GGACGGCTTT
CATCGCTCAG CGCCGCCCAA GGTTTTGCGC TAA
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| Protein sequence | MGYQSCLRAN SFAGQTYVVT GGGSGIGRCT AHELASLGAS VVLLGRNLEK LQRTSNEIID
DGGSADYFAL DIRDEEQVIT TVSAILKAHE HVHGLLNIAG GQFRAPLEAI SKKGFESVVQ
TNLVGGFLMA RELFKQHFKA HGGSIVNITA DNKNGMPGMG HSGAARAGVE NLTKTAAWEW
GRYGVRVNTV APGWVASSGL DTYPQEMQAA INNLKYAVPL GRIASEAEIS ALICFLMSPG
ANFISGQSMW VDGAASMGSA PALAPLGQTA PVNSTTWDGF HRSAPPKVLR
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