More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2742 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_2742  two component transcriptional regulator, winged helix family  100 
 
 		 230 aa  472  1e-132  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.142828  normal  1 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  50.88 
 
 		 229 aa  238  5.999999999999999e-62  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_5352  two component transcriptional regulator, winged helix family  47.35 
 
 		 224 aa  213  1.9999999999999998e-54  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013061  Phep_0203  response regulator receiver  43.61 
 
 		 231 aa  208  6e-53  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.359659 
 
 
-
 
NC_013730  Slin_5387  two component transcriptional regulator, winged helix family  40.68 
 
 		 236 aa  198  5e-50  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_4089  two component transcriptional regulator, winged helix family  41.41 
 
 		 230 aa  197  1.0000000000000001e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  hitchhiker  0.00519658 
 
 
-
 
NC_002950  PG1089  DNA-binding response regulator RprY  45.37 
 
 		 245 aa  196  2.0000000000000003e-49  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.414682 
 
 
-
 
NC_013132  Cpin_0255  two component transcriptional regulator, winged helix family  40.87 
 
 		 232 aa  194  6e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_4970  two component transcriptional regulator  40.97 
 
 		 228 aa  192  3e-48  Flavobacterium johnsoniae UW101  Bacteria  normal  0.375881  n/a   
 
 
-
 
NC_013037  Dfer_3651  two component transcriptional regulator, winged helix family  41.41 
 
 		 228 aa  191  6e-48  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0435949 
 
 
-
 
NC_013037  Dfer_3566  two component transcriptional regulator, winged helix family  42.86 
 
 		 228 aa  188  7e-47  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.720677 
 
 
-
 
NC_013132  Cpin_1242  two component transcriptional regulator, winged helix family  41.3 
 
 		 234 aa  186  2e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_1246  two component transcriptional regulator, winged helix family  43.36 
 
 		 233 aa  182  4.0000000000000006e-45  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.877806  normal  1 
 
 
-
 
NC_009441  Fjoh_3460  two component transcriptional regulator  41.23 
 
 		 238 aa  181  6e-45  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0108229  n/a   
 
 
-
 
NC_014230  CA2559_09498  two-component system, transcriptional regulatory protein  39.91 
 
 		 236 aa  178  7e-44  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_0856  two component transcriptional regulator, winged helix family  40 
 
 		 233 aa  176  3e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013162  Coch_0209  two component transcriptional regulator, winged helix family  40.09 
 
 		 251 aa  176  3e-43  Capnocytophaga ochracea DSM 7271  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_7053  two component transcriptional regulator, winged helix family  37.83 
 
 		 248 aa  170  1e-41  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00262574  normal  1 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  39.65 
 
 		 235 aa  165  6.9999999999999995e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal  1 
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  34.2 
 
 		 241 aa  159  4e-38  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.154165 
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  39.32 
 
 		 234 aa  154  1e-36  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal  1 
 
 
-
 
NC_013132  Cpin_1649  two component transcriptional regulator, winged helix family  34.63 
 
 		 236 aa  154  1e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  35.84 
 
 		 225 aa  152  2.9999999999999998e-36  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_4521  two component transcriptional regulator  34.68 
 
 		 230 aa  151  8.999999999999999e-36  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  31.82 
 
 		 256 aa  146  2.0000000000000003e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  35.56 
 
 		 257 aa  144  9e-34  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  32.76 
 
 		 236 aa  144  1e-33  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal  1 
 
 
-
 
NC_011138  MADE_03339  Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain  34.51 
 
 		 226 aa  142  3e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_2159  two component transcriptional regulator, winged helix family  35.96 
 
 		 227 aa  141  7e-33  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00177162  n/a   
 
 
-
 
NC_013530  Xcel_2514  two component transcriptional regulator, winged helix family  36.68 
 
 		 226 aa  141  8e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.24701  n/a   
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  33.78 
 
 		 240 aa  140  9.999999999999999e-33  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_4284  two component transcriptional regulator, winged helix family  38.36 
 
 		 227 aa  140  1.9999999999999998e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  36.36 
 
 		 227 aa  139  3e-32  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  35.37 
 
 		 247 aa  139  3e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  34.63 
 
 		 248 aa  139  3e-32  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  1  n/a   
 
 
-
 
NC_011365  Gdia_2950  two component transcriptional regulator, winged helix family  37 
 
 		 258 aa  139  3.9999999999999997e-32  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0307025  normal  0.153934 
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  33.48 
 
 		 235 aa  139  4.999999999999999e-32  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2095  two component transcriptional regulator, winged helix family  35.56 
 
 		 256 aa  139  4.999999999999999e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  34.22 
 
 		 236 aa  139  4.999999999999999e-32  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  31.72 
 
 		 233 aa  139  4.999999999999999e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  34.05 
 
 		 234 aa  138  6e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007760  Adeh_3856  two component transcriptional regulator  33.62 
 
 		 227 aa  138  7e-32  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.199978  n/a   
 
 
-
 
NC_011891  A2cp1_3997  two component transcriptional regulator, winged helix family  33.19 
 
 		 227 aa  138  7e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  37.05 
 
 		 228 aa  138  7.999999999999999e-32  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_0346  two component transcriptional regulator, winged helix family  32.61 
 
 		 234 aa  138  7.999999999999999e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011126  HY04AAS1_1151  two component transcriptional regulator, winged helix family  34.65 
 
 		 225 aa  138  7.999999999999999e-32  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  33.48 
 
 		 227 aa  138  7.999999999999999e-32  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_010003  Pmob_0095  two component transcriptional regulator  37.44 
 
 		 224 aa  137  1e-31  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  34.8 
 
 		 232 aa  137  1e-31  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_0379  two component transcriptional regulator, winged helix family  35.09 
 
 		 233 aa  137  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.605912  n/a   
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  35.53 
 
 		 235 aa  137  1e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_009091  P9301_18111  two-component response regulator  33.19 
 
 		 248 aa  136  2e-31  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  35.37 
 
 		 228 aa  136  2e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  34.51 
 
 		 226 aa  137  2e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.845216 
 
 
-
 
NC_007604  Synpcc7942_2416  two component transcriptional regulator  35.53 
 
 		 255 aa  137  2e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  0.0279623 
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  33.63 
 
 		 242 aa  136  2e-31  Frankia sp. CcI3  Bacteria  normal  1  normal  0.925989 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  35.37 
 
 		 242 aa  136  2e-31  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_009718  Fnod_0785  two component transcriptional regulator  37.17 
 
 		 229 aa  136  2e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0635827  n/a   
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  33.62 
 
 		 248 aa  137  2e-31  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  35.56 
 
 		 240 aa  135  4e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  33.33 
 
 		 248 aa  135  4e-31  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  32.62 
 
 		 243 aa  135  5e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  35.37 
 
 		 242 aa  135  5e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.559477 
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  33.78 
 
 		 233 aa  135  5e-31  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  35.81 
 
 		 244 aa  135  6.0000000000000005e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  33.48 
 
 		 228 aa  135  6.0000000000000005e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  33.19 
 
 		 248 aa  135  7.000000000000001e-31  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  33.77 
 
 		 229 aa  135  7.000000000000001e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  0.834843 
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  33.33 
 
 		 252 aa  134  8e-31  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_005957  BT9727_0923  two-component response regulator; MrsR2 protein  34.65 
 
 		 240 aa  134  9e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.227452  n/a   
 
 
-
 
NC_006274  BCZK0906  response regulator  34.65 
 
 		 240 aa  134  9e-31  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007516  Syncc9605_1618  two component transcriptional regulator  34.76 
 
 		 254 aa  134  9.999999999999999e-31  Synechococcus sp. CC9605  Bacteria  normal  1  normal  0.218753 
 
 
-
 
NC_013174  Jden_1827  two component transcriptional regulator, winged helix family  34.93 
 
 		 227 aa  134  9.999999999999999e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_3919  two component transcriptional regulator, winged helix family  32.75 
 
 		 227 aa  134  9.999999999999999e-31  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  32.3 
 
 		 236 aa  134  9.999999999999999e-31  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_2957  two component transcriptional regulator  34.21 
 
 		 223 aa  134  9.999999999999999e-31  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000000406961  n/a   
 
 
-
 
NC_010468  EcolC_3412  two component heavy metal response transcriptional regulator  36.12 
 
 		 226 aa  134  9.999999999999999e-31  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007335  PMN2A_1196  two component transcriptional regulator  34.2 
 
 		 246 aa  133  1.9999999999999998e-30  Prochlorococcus marinus str. NATL2A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  33.77 
 
 		 228 aa  133  1.9999999999999998e-30  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  32.74 
 
 		 240 aa  134  1.9999999999999998e-30  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_009380  Strop_4477  response regulator receiver  34.82 
 
 		 228 aa  133  1.9999999999999998e-30  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.0220713 
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  34.8 
 
 		 222 aa  133  1.9999999999999998e-30  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  34.22 
 
 		 233 aa  133  1.9999999999999998e-30  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  34.36 
 
 		 234 aa  133  1.9999999999999998e-30  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  32.19 
 
 		 254 aa  133  1.9999999999999998e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  33.78 
 
 		 255 aa  133  1.9999999999999998e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_008819  NATL1_20711  two-component response regulator  34.2 
 
 		 246 aa  134  1.9999999999999998e-30  Prochlorococcus marinus str. NATL1A  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  36.12 
 
 		 225 aa  132  3e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_009456  VC0395_0990  transcriptional regulator  35.68 
 
 		 224 aa  132  3e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.000166767  n/a   
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  34.63 
 
 		 234 aa  133  3e-30  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  0.473137 
 
 
-
 
NC_013522  Taci_0717  two component transcriptional regulator, winged helix family  32.3 
 
 		 226 aa  133  3e-30  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000154116  n/a   
 
 
-
 
NC_012034  Athe_1751  two component transcriptional regulator, winged helix family  36.84 
 
 		 234 aa  132  3.9999999999999996e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.36 
 
 		 226 aa  132  5e-30  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  0.132847 
 
 
-
 
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  30.34 
 
 		 234 aa  132  5e-30  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  34.06 
 
 		 243 aa  132  5e-30  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal  1 
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.8 
 
 		 238 aa  132  5e-30  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  34.06 
 
 		 243 aa  132  5e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  35.75 
 
 		 227 aa  132  6e-30  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.71904 
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  32.16 
 
 		 234 aa  132  6e-30  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  32.76 
 
 		 237 aa  131  6.999999999999999e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal  1 
 
 
-
 
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