More than 300 homologs were found in PanDaTox collection
for query gene Avi_1273 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_1273  cAMP-binding protein  100 
 
 
243 aa  499  1e-140  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  38.5 
 
 
242 aa  141  9e-33  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  36 
 
 
242 aa  138  7e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  34.65 
 
 
230 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  33.87 
 
 
227 aa  117  1.9999999999999998e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  34.25 
 
 
229 aa  116  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  34.25 
 
 
229 aa  116  3e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  36.26 
 
 
229 aa  115  7.999999999999999e-25  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  37.65 
 
 
253 aa  114  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  33.33 
 
 
231 aa  114  1.0000000000000001e-24  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  33.16 
 
 
248 aa  114  2.0000000000000002e-24  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  30.15 
 
 
262 aa  114  2.0000000000000002e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  33.33 
 
 
229 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  36.68 
 
 
239 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  36.21 
 
 
230 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  35.58 
 
 
238 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  34.95 
 
 
246 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  36.18 
 
 
239 aa  113  3e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  35.58 
 
 
238 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  34.1 
 
 
215 aa  112  4.0000000000000004e-24  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  33.16 
 
 
251 aa  112  4.0000000000000004e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  35.94 
 
 
239 aa  112  6e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  32.04 
 
 
249 aa  110  2.0000000000000002e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  34.76 
 
 
230 aa  110  2.0000000000000002e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  34.66 
 
 
228 aa  108  9.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  32.22 
 
 
229 aa  108  1e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  34.38 
 
 
239 aa  107  2e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  35.93 
 
 
237 aa  105  5e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  32.29 
 
 
220 aa  105  6e-22  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  33.33 
 
 
236 aa  105  8e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  32.95 
 
 
231 aa  104  1e-21  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  32.76 
 
 
229 aa  104  1e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  32.6 
 
 
227 aa  103  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  33.33 
 
 
229 aa  102  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  35.15 
 
 
234 aa  102  6e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  34.16 
 
 
245 aa  101  9e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  35.4 
 
 
220 aa  99.8  3e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  34.57 
 
 
227 aa  98.6  9e-20  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  30.73 
 
 
235 aa  97.8  1e-19  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  30.85 
 
 
204 aa  97.4  2e-19  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  30.89 
 
 
230 aa  97.4  2e-19  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  31.46 
 
 
250 aa  97.1  2e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  31.46 
 
 
250 aa  96.7  3e-19  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  32.54 
 
 
208 aa  96.3  4e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  31.61 
 
 
268 aa  96.3  4e-19  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  32.2 
 
 
254 aa  94.7  1e-18  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  31.58 
 
 
222 aa  92.8  4e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  31.89 
 
 
211 aa  92.4  6e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  33.14 
 
 
211 aa  90.9  1e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  34.88 
 
 
226 aa  91.3  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  30.86 
 
 
310 aa  91.7  1e-17  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  31.71 
 
 
250 aa  90.9  2e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  29.53 
 
 
242 aa  90.5  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  29.09 
 
 
240 aa  90.1  3e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  30.17 
 
 
242 aa  90.1  3e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  27.57 
 
 
230 aa  89.4  4e-17  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  28.43 
 
 
240 aa  88.6  9e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  31.06 
 
 
244 aa  88.6  9e-17  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  32.55 
 
 
232 aa  86.7  3e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  32.45 
 
 
224 aa  86.7  3e-16  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  29.73 
 
 
232 aa  85.5  6e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  29.05 
 
 
257 aa  85.5  7e-16  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.79 
 
 
241 aa  84  0.000000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  28.5 
 
 
253 aa  84  0.000000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  30.23 
 
 
256 aa  84  0.000000000000002  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.32 
 
 
230 aa  84.3  0.000000000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008740  Maqu_2378  CRP/FNR family transcriptional regulator  27.86 
 
 
248 aa  83.2  0.000000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  29.58 
 
 
232 aa  82.8  0.000000000000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  27.06 
 
 
258 aa  82.8  0.000000000000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  26.01 
 
 
230 aa  82.8  0.000000000000005  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  26.42 
 
 
249 aa  82.8  0.000000000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  28.04 
 
 
223 aa  82  0.000000000000008  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  28.11 
 
 
256 aa  82  0.000000000000009  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  29.47 
 
 
250 aa  81.3  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  29.55 
 
 
236 aa  81.3  0.00000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  27.44 
 
 
236 aa  80.5  0.00000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  27.67 
 
 
236 aa  80.9  0.00000000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  27.44 
 
 
236 aa  80.9  0.00000000000002  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  27.49 
 
 
244 aa  80.1  0.00000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  27.49 
 
 
244 aa  80.1  0.00000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  30.34 
 
 
247 aa  79.7  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  29.35 
 
 
242 aa  79.7  0.00000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  27.49 
 
 
244 aa  79.3  0.00000000000005  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  27.49 
 
 
244 aa  79.3  0.00000000000005  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  31.54 
 
 
244 aa  79.3  0.00000000000005  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  31.54 
 
 
244 aa  79  0.00000000000006  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  30.11 
 
 
242 aa  79  0.00000000000006  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  31.87 
 
 
254 aa  79  0.00000000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009671  Oant_4644  CRP/FNR family transcriptional regulator  27.12 
 
 
232 aa  79  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  27.81 
 
 
241 aa  79  0.00000000000007  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  29.89 
 
 
242 aa  78.6  0.00000000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  27.81 
 
 
255 aa  78.6  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  26.9 
 
 
244 aa  77.8  0.0000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  25 
 
 
248 aa  77.8  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  30.65 
 
 
243 aa  77.8  0.0000000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  31.54 
 
 
244 aa  77.8  0.0000000000001  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  26.49 
 
 
211 aa  77.8  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  25 
 
 
248 aa  77.8  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  27.18 
 
 
254 aa  77.4  0.0000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  27.69 
 
 
250 aa  77  0.0000000000002  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
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