More than 300 homologs were found in PanDaTox collection
for query gene DvMF_2551 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_2551  response regulator receiver protein  100 
 
 
322 aa  654    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2719  response regulator receiver protein  92.31 
 
 
142 aa  227  2e-58  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.617775 
 
 
-
 
NC_007519  Dde_3714  response regulator receiver domain-containing protein  83.46 
 
 
131 aa  223  4e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2257  response regulator receiver protein  62.07 
 
 
120 aa  162  6e-39  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0870  response regulator receiver protein  62.93 
 
 
117 aa  160  2e-38  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.226165  normal  0.635424 
 
 
-
 
NC_013173  Dbac_0575  response regulator receiver protein  61.21 
 
 
117 aa  154  2.9999999999999998e-36  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0869  response regulator receiver protein  62.71 
 
 
119 aa  150  2e-35  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.588002  normal  0.840358 
 
 
-
 
NC_008751  Dvul_2718  response regulator receiver protein  56.03 
 
 
133 aa  147  2.0000000000000003e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.617775 
 
 
-
 
NC_007519  Dde_3713  response regulator receiver domain-containing protein  53.68 
 
 
153 aa  147  3e-34  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2592  two component transcriptional regulator, Fis family  47.79 
 
 
128 aa  118  9.999999999999999e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2411  response regulator receiver protein  37.98 
 
 
138 aa  107  2e-22  Desulfovibrio vulgaris DP4  Bacteria  normal  0.133639  normal  0.234327 
 
 
-
 
NC_007604  Synpcc7942_1816  periplasmic sensor hybrid histidine kinase  30.18 
 
 
977 aa  98.2  2e-19  Synechococcus elongatus PCC 7942  Bacteria  normal  0.218789  normal  0.39116 
 
 
-
 
NC_013422  Hneap_0135  integral membrane sensor hybrid histidine kinase  26.37 
 
 
858 aa  89  1e-16  Halothiobacillus neapolitanus c2  Bacteria  normal  0.711395  n/a   
 
 
-
 
NC_008699  Noca_1748  response regulator receiver  37.88 
 
 
123 aa  85.9  8e-16  Nocardioides sp. JS614  Bacteria  normal  0.122601  n/a   
 
 
-
 
NC_010571  Oter_0435  response regulator receiver protein  24.33 
 
 
383 aa  83.6  0.000000000000005  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2547  putative CheA signal transduction histidine kinase  26.38 
 
 
1098 aa  82  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3559  putative CheA signal transduction histidine kinase  26.38 
 
 
1098 aa  82.4  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.989868 
 
 
-
 
NC_011729  PCC7424_4695  putative CheA signal transduction histidine kinase  26.47 
 
 
1127 aa  82.4  0.00000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008578  Acel_0627  response regulator receiver protein  35.39 
 
 
163 aa  81.3  0.00000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.143116  hitchhiker  0.00307044 
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  37.59 
 
 
1651 aa  80.9  0.00000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  41.86 
 
 
461 aa  78.2  0.0000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007952  Bxe_B0483  response regulator receiver domain-containing protein  43.37 
 
 
116 aa  76.3  0.0000000000007  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  33.58 
 
 
970 aa  75.9  0.0000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_02637  regulatory protein PilH family  32.14 
 
 
128 aa  75.9  0.0000000000009  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4432  PAS/PAC sensor hybrid histidine kinase  25.31 
 
 
1002 aa  75.5  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5808  sensor histidine kinase  35.34 
 
 
1299 aa  75.5  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.284316  normal 
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.81 
 
 
863 aa  75.1  0.000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_009972  Haur_2143  integral membrane sensor hybrid histidine kinase  21.32 
 
 
755 aa  75.5  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2025  response regulator receiver sensor signal transduction histidine kinase  34.07 
 
 
452 aa  74.7  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0489  response regulator receiver  40.24 
 
 
121 aa  74.7  0.000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.646514  normal 
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  43.75 
 
 
236 aa  75.1  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  35.25 
 
 
221 aa  75.1  0.000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  43.01 
 
 
326 aa  74.3  0.000000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1014  CheA signal transduction histidine kinase  37.14 
 
 
928 aa  75.1  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.186099  normal 
 
 
-
 
NC_009767  Rcas_3309  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.77 
 
 
900 aa  75.1  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.269875  normal  0.342346 
 
 
-
 
NC_008340  Mlg_0356  response regulator receiver protein  34.04 
 
 
121 aa  74.7  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0780111  normal  0.957515 
 
 
-
 
NC_013205  Aaci_2784  response regulator receiver protein  37.6 
 
 
125 aa  74.3  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.0945133  n/a   
 
 
-
 
NC_013440  Hoch_3814  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  22.67 
 
 
1131 aa  74.3  0.000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.257486 
 
 
-
 
NC_007413  Ava_0508  response regulator receiver domain-containing protein  32.62 
 
 
121 aa  74.3  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.481314  normal 
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  31.72 
 
 
132 aa  74.3  0.000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_011146  Gbem_0743  response regulator receiver protein  31.67 
 
 
132 aa  73.9  0.000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3764  multi-sensor hybrid histidine kinase  26.57 
 
 
917 aa  73.9  0.000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.432635  normal 
 
 
-
 
NC_011071  Smal_3018  response regulator receiver protein  32.87 
 
 
123 aa  73.6  0.000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.454082 
 
 
-
 
NC_009675  Anae109_0644  response regulator receiver modulated CheB methylesterase  43.68 
 
 
358 aa  73.6  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.173945  normal 
 
 
-
 
NC_010622  Bphy_0135  multi-sensor hybrid histidine kinase  34.59 
 
 
1631 aa  73.2  0.000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA2848  nitrogen regulation protein NtrX, putative  39.32 
 
 
455 aa  73.2  0.000000000006  Methylococcus capsulatus str. Bath  Bacteria  normal  0.754871  n/a   
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  38.02 
 
 
489 aa  73.2  0.000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2022  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.42 
 
 
589 aa  73.2  0.000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_1705  histidine kinase  24.53 
 
 
910 aa  73.2  0.000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD0221  response regulator PleD  23.44 
 
 
460 aa  72.8  0.000000000007  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  38.82 
 
 
235 aa  72.8  0.000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2159  PAS/PAC sensor hybrid histidine kinase  29.04 
 
 
796 aa  72.8  0.000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.758044 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  38.82 
 
 
231 aa  71.6  0.00000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5515  response regulator receiver protein  35.86 
 
 
134 aa  72  0.00000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4952  response regulator receiver protein  31.91 
 
 
121 aa  71.6  0.00000000001  'Nostoc azollae' 0708  Bacteria  normal  0.699568  n/a   
 
 
-
 
NC_008751  Dvul_1201  response regulator receiver protein  30.97 
 
 
135 aa  72  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0883705  hitchhiker  0.00883957 
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  32.14 
 
 
370 aa  72  0.00000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5033  type IV pilus response regulator PilH  39.02 
 
 
121 aa  71.6  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.33 
 
 
738 aa  71.2  0.00000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_010676  Bphyt_6237  integral membrane sensor hybrid histidine kinase  32.48 
 
 
721 aa  71.6  0.00000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.703753 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  40 
 
 
232 aa  71.2  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2487  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.68 
 
 
735 aa  71.2  0.00000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3309  response regulator receiver domain-containing protein  29.71 
 
 
121 aa  71.6  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0791773  normal 
 
 
-
 
NC_007925  RPC_4677  response regulator receiver domain-containing protein  30.83 
 
 
121 aa  71.6  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1873  response regulator receiver  43.01 
 
 
326 aa  71.2  0.00000000002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.402703 
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  36.36 
 
 
225 aa  71.2  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_009485  BBta_6738  response regulator receiver, CheY1  28.89 
 
 
121 aa  71.2  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.079904  normal 
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  29.32 
 
 
705 aa  70.5  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2814  response regulator receiver protein  29.2 
 
 
124 aa  70.9  0.00000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212392  normal  0.180632 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  41.67 
 
 
226 aa  70.5  0.00000000003  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_009439  Pmen_0404  response regulator receiver protein  31.21 
 
 
121 aa  70.9  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  42.35 
 
 
204 aa  70.9  0.00000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3816  response regulator receiver protein  32.82 
 
 
125 aa  70.9  0.00000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3535  response regulator receiver protein  35.34 
 
 
134 aa  70.9  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.283754  normal  0.0368978 
 
 
-
 
NC_007951  Bxe_A0118  response regulator receiver domain-containing protein  32.82 
 
 
125 aa  70.9  0.00000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4814  histidine kinase  48.19 
 
 
919 aa  70.9  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.00150972  n/a   
 
 
-
 
NC_011830  Dhaf_4050  two component transcriptional regulator, winged helix family  38.82 
 
 
227 aa  70.9  0.00000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00552008  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  30.19 
 
 
376 aa  70.5  0.00000000003  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_009523  RoseRS_3737  two component transcriptional regulator  33.57 
 
 
231 aa  70.5  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00273603 
 
 
-
 
NC_009523  RoseRS_3876  multi-sensor hybrid histidine kinase  26.18 
 
 
1022 aa  70.9  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1504  two component transcriptional regulator  32.87 
 
 
231 aa  70.9  0.00000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.263867  normal  0.57819 
 
 
-
 
NC_009441  Fjoh_3120  histidine kinase  31.65 
 
 
1344 aa  70.1  0.00000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.628446  n/a   
 
 
-
 
NC_007492  Pfl01_5307  response regulator receiver domain-containing protein  29.86 
 
 
121 aa  70.1  0.00000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0137607  normal  0.215998 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  38.55 
 
 
734 aa  70.1  0.00000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  36.78 
 
 
380 aa  70.5  0.00000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_0654  response regulator receiver protein  37.93 
 
 
120 aa  70.1  0.00000000004  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.54464 
 
 
-
 
NC_010725  Mpop_0148  response regulator receiver sensor signal transduction histidine kinase  37.59 
 
 
1048 aa  70.1  0.00000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.872071 
 
 
-
 
NC_008463  PA14_05330  twitching motility protein PilH  36.59 
 
 
121 aa  70.5  0.00000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
476 aa  70.5  0.00000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_009656  PSPA7_0509  twitching motility protein PilH  36.59 
 
 
121 aa  70.5  0.00000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_17451  two-component response regulator  39.17 
 
 
269 aa  70.1  0.00000000005  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6353  GAF sensor hybrid histidine kinase  23.53 
 
 
1839 aa  70.1  0.00000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3678  response regulator receiver protein  29.71 
 
 
123 aa  70.1  0.00000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.716343  n/a   
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  26.52 
 
 
457 aa  69.7  0.00000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3775  response regulator receiver domain-containing protein  34.48 
 
 
394 aa  69.7  0.00000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0963043 
 
 
-
 
NC_010571  Oter_1263  response regulator receiver protein  43.68 
 
 
129 aa  69.7  0.00000000006  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3907  response regulator receiver protein  32.12 
 
 
125 aa  69.7  0.00000000006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  35.16 
 
 
229 aa  69.7  0.00000000006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_008312  Tery_3999  adenylate/guanylate cyclase  44.44 
 
 
351 aa  69.7  0.00000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.558191 
 
 
-
 
NC_009720  Xaut_3859  response regulator receiver protein  29.5 
 
 
124 aa  69.7  0.00000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
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