| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5808 |
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| Symbol | |
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| ID | 5149715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 6051484 |
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| End bp | 6055383 |
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| Gene Length | 3900 bp |
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| Protein Length | 1299 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640560537 |
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| Product | sensor histidine kinase |
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| Protein accession | YP_001241659 |
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| Protein GI | 148257074 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.284316 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCGGATC AGCGGCAGCC AAGGCAGGAT CAGGACCTCC GCTCTGCGGA GCGGGACAGG
CTGTTTTCGG GAGGTAGCGA GCTCGCCGGG CTGATGCTGC AGTTCGATTG GGGCAGTACC
TCGATCGGTC CGCCGGAGCA ATGGCCGCAA AGCCTGAAGA CTGCCGTCAG AATCATGCTC
ACCTCTCAAC AGCCGATCTG GATCGGCTGG GGAAAGGAGC TCATCTACCT CTACAACGAC
GCCTACAAGG CCATCATCGG CGGCAAACAT CCCTGGGCGC TCGGACGTCC AACGTCGGTC
GTGTGGCACG AGATCTGGGA GGATATCGGT CCGCTGCTTG CCAAAGCGAG CGGCGGCGAT
CGAGGCACCT ATGTCGAGGC ACAGCTCCTG ATCATGGAGC GCAACGGCTT TCCCGAGGAG
ACCTACTACA CGTTCTCCTA TAGTCCGATT CCTGACGACG ACGGGTCGCC CGGCGGCATC
TTCTGCGCCA ACACCGACGA TACGCAGCGC GTGATCAGCG AGCGGCAGCT TTCCCTGCTG
CGCGAACTCG CCAACGCTGC GGCGGAGGCT CGCAGCGTCG ACCAGGCCTG TACGAGTTGC
GCGCGCGCCT TGGCGCAGGA GCCGCGCGAT CTCCCCTTCG TGATGATTTA CATGATGGAG
GAGAGCGGCA ACCAAGCCCG GCTCGCAGCG TTCACCGGGA TCGATCCAAC TCATCCCGCG
GTTCAGCAAA GCCTGTCGAT CGGGCGCGAC AGCATGTGGC CGCTCGCCGA GGCGCTGCGA
CTGCAGGCGC CGGTTCTGGT GCGCGATCTG CGGCGATCGT TCGGCGTCGA TTTTCCCAGC
GGTGGCTGGC GGCAACCGCC CAAACAGGCG GTGGTGCTCC CCATCCTCGC GTCCGGCGAA
GTCGGCGAGA GCGGCTTCGT CATCGCCGGG CTCAATCCGT TTCGTCTCTA CGATGAAAGC
TATGCCCGGT TCCTGAACCT CGTCTCCGGC CAAATCGCCG CGGCTGCCGG AAATGGCCTG
GCCTATGAGG CCGAACGCCG GCGGGCCGAG GCGCTGGCGG AAATCGACCG CGCCAAGACG
ACCTTCTTCT CCAATATCAG CCATGAGTTT CGCACCCCGC TGACGCTGAT GCTGAGCCCG
CTCGAAGACA TGCTCGCGCG CGCGGATGCG GGGCTTGGCG CCGAACAGCT GGCGATGCTG
AACCTGATTC ACCGCAACGG CATCCGGCTG CTGAAGCTGG TGAACACGCT GCTCGACTTT
TCCAGGATCG AGGCCGGTCG CATGACCGCG AGCTTCGAGC CGGTGGATCT GGCGGCCCTG
ACGTCCGAGC TCGTGTCGAA TTTCCGGTCT GCGACAGACC GCGCCGGCCT GCGCCTCGCG
ATCGAGGCTG CGCCTCTTCC TCAGCCTGTC TATGTCGATC GCGACCTGTG GGAGAAGATC
GTTCTCAATC TGCTGTCGAA TGCCTTCAAG TTCACCTTCG ACGGCGGAAT TTCCGTCACG
ATCGGCATCG CCGCCGACAT GCGACATGCG GAATTCGCGG TCCATGACAC CGGCACAGGC
ATTCCGCCGG ACGAGCTGCC GCATCTGTTC GAGCGCTTTC GCCGCGTCGC GGGCGCGCGC
GGTCGCTCCT ACGAGGGAAG TGGGATCGGT CTGGCGCTGG TCCAGGAGCT CGTCAAGCTG
CATGGCGGCG AGATCACGGC CGACAGCGAG CTCGGCCGTG GCTCCGTCTT CACTGTGCGG
CTTCCGTTCG GCGCATCGCA TTTGCCGCCC GCCCAGCTCC GGTCCGCACG GGCGCAGGTC
ACGACCAATA TGCGGGCGCG GGCCTATATC GACGAGGCGT TGGGCTGGCT GAACGGCGAT
CAGCCTGCCG AACTGCCGCA TCCGTCATCG CCGGACGATC TGGGACTTCC CGCTGCGGCG
GCGGCCGGGC GAGACCGTGT CGTGCTGGCT GACGACAATC CGGACATGCG TGACTATGTG
CGTCGTCTGC TGGGGCAGGA CTATGAGGTC GAAGCCGTCG GCGATGGCGG CGCCGCACTG
GAGGCCATGC GACGCCGCCG GCCCGATCTT GTTCTGACCG ACGTGATGAT GCCCGGAATG
GACGGGTTCG GTCTGCTGCA GGCGATGCGC AGCGACCCGC GGCTGCGCGA CATTCCGGTG
GTCATGTTGT CCGCGCGTGC GGGCGAGGAG GCGAAGGTCG AAGGCCTCGA CGCCGGTGCT
AGCGATTATC TCAGCAAGCC GTTCAGTGCG CGCGAATTGC TGGCGCGTGT CCGGGCGAAT
ATCGATCTGG CACGGGTGAG GCGCGAGGCC GAGACCACGT TGCGCGAGCT GAACGAGCGG
CTGGAGGCGC AGGTCTCCGA GCGAACGGCC GAACTGCAGG CGAAGGAGGC GCGGCTGCGA
ACGATCTTCG AGGCGAGCTA TACGTTCCAG GCCCTGTTGT CCGGCGAGGG CACGCTGCTC
GACGCCAATG CCACCTCGCT CGACGCGATT GCGGCGCCGT TGGACAAGGT CGCCGGGCGG
CCGTTCTGGG ACACACCATG GTTCACGGGC ACGCCCGGCA TGCCCGAGCT GATCAAGTCA
CTCGTCGACA TCGTCATCCA TGGCGAGGTC GCGCGCCGGG AGATTCAGCT CGATCTTCCG
GTCGGCGGCC GGCGGTGGTT CGATTTCCAG ATGCGGCCGG TGCGCGACGA GGCGGGACAG
CTCGCGGCGA TCGTCCCCGA GGCCGTCGAG TTGACGGAGC GTCGCCAGGC CGAGGAAGCG
TTCCGGCAGG CCCAGAAAAT GGAGGCGATC GGCCAGCTCA CCGGCGGCGT CGCGCACGAC
TTCAACAACC TCCTGACCGT GATCAGGTCA TCGGCCGATC TGCTGCGCCG ACGCCAATTG
CCGCCCGAGC GGATGCGGCG TTACGTGGAC GCGATTTCCG ACACCGCAGA TCGCGCAGCC
AAGCTGACCG GCCAGTTGCT GGCCTTCGCG CGGCGCACGC CGATGGAGCG CCAGGTTTTC
GACGCGGCGC GCCATCTTGA GCAGATCGCG GAGATGCTGC AGACCGTGCT GGGCGCGCCG
GCCGTGATCG CGCTCGATCT TCGCGCCCGG CCATTGCCGG TCGATGTCGA CATCAATCAG
TTCGACACTG CACTTGTGAA CCTCGTCGCC AATGCGCGGG ATGCGATGGA TGGCCGCGGC
GTGCTGACCA TCCGTGGCGA ACGGGTCGAT CACGGTGGAC CGACTGCGCC AGAGCAATTC
GTCTCCATCG CCGTCAGCGA CACCGGATGC GGCATTCCGC CCGAGCAGCT CGACCGCATT
TTCGAACCGT TCTTCACGAC CAAGGGCGTC GGCCGCGGCA CGGGCCTTGG CCTGTCGCAG
GTCTATGGCT TCGTGCACCA GTCTGGCGGC CGGGTGCTGA CCGACAGCGA GGTCGGCAGA
GGAACCACGC TGACCCTGCT GCTGCCGCTG ACCGAGAAGC CGCTCGAGTC GCATGAGCGG
GATGAGCGTG CCCCTGAGCT GCTCACTGCG CGCTGGAACG TGCTGGTGGT CGAGGACAAC
CCCGAGATCG GCGAATTCTC GACGCAACTG CTCGAAGATC TCGGTTACAG AACCGTTCTG
GCCCGCAGCG GGATCGACGC GTTGCGCATG CTCGACGACA ATCCTAAACG CTTCGACCTC
GTGCTCAGCG ACGTCGTGAT GCCCGGAATG GACGGGGTCA CGCTCGGCCA GGAAATTCGG
CGTCGGCTAC CGACCATTCC GATCGTGCTC AACAGCGGCT ACAGCGATGT TCTCGCCGAT
GGCGGTCGTC ACGGCTTCAG CCTGATTCAC AAGCCCTATT CGGTCGACGA ATTGTCGCGC
GTGCTGCGCC AGGTGATGGC CGGGCGCGCA ACGAGCTCGG AGCAGGCTCC GTCCGAGTAG
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| Protein sequence | MPDQRQPRQD QDLRSAERDR LFSGGSELAG LMLQFDWGST SIGPPEQWPQ SLKTAVRIML
TSQQPIWIGW GKELIYLYND AYKAIIGGKH PWALGRPTSV VWHEIWEDIG PLLAKASGGD
RGTYVEAQLL IMERNGFPEE TYYTFSYSPI PDDDGSPGGI FCANTDDTQR VISERQLSLL
RELANAAAEA RSVDQACTSC ARALAQEPRD LPFVMIYMME ESGNQARLAA FTGIDPTHPA
VQQSLSIGRD SMWPLAEALR LQAPVLVRDL RRSFGVDFPS GGWRQPPKQA VVLPILASGE
VGESGFVIAG LNPFRLYDES YARFLNLVSG QIAAAAGNGL AYEAERRRAE ALAEIDRAKT
TFFSNISHEF RTPLTLMLSP LEDMLARADA GLGAEQLAML NLIHRNGIRL LKLVNTLLDF
SRIEAGRMTA SFEPVDLAAL TSELVSNFRS ATDRAGLRLA IEAAPLPQPV YVDRDLWEKI
VLNLLSNAFK FTFDGGISVT IGIAADMRHA EFAVHDTGTG IPPDELPHLF ERFRRVAGAR
GRSYEGSGIG LALVQELVKL HGGEITADSE LGRGSVFTVR LPFGASHLPP AQLRSARAQV
TTNMRARAYI DEALGWLNGD QPAELPHPSS PDDLGLPAAA AAGRDRVVLA DDNPDMRDYV
RRLLGQDYEV EAVGDGGAAL EAMRRRRPDL VLTDVMMPGM DGFGLLQAMR SDPRLRDIPV
VMLSARAGEE AKVEGLDAGA SDYLSKPFSA RELLARVRAN IDLARVRREA ETTLRELNER
LEAQVSERTA ELQAKEARLR TIFEASYTFQ ALLSGEGTLL DANATSLDAI AAPLDKVAGR
PFWDTPWFTG TPGMPELIKS LVDIVIHGEV ARREIQLDLP VGGRRWFDFQ MRPVRDEAGQ
LAAIVPEAVE LTERRQAEEA FRQAQKMEAI GQLTGGVAHD FNNLLTVIRS SADLLRRRQL
PPERMRRYVD AISDTADRAA KLTGQLLAFA RRTPMERQVF DAARHLEQIA EMLQTVLGAP
AVIALDLRAR PLPVDVDINQ FDTALVNLVA NARDAMDGRG VLTIRGERVD HGGPTAPEQF
VSIAVSDTGC GIPPEQLDRI FEPFFTTKGV GRGTGLGLSQ VYGFVHQSGG RVLTDSEVGR
GTTLTLLLPL TEKPLESHER DERAPELLTA RWNVLVVEDN PEIGEFSTQL LEDLGYRTVL
ARSGIDALRM LDDNPKRFDL VLSDVVMPGM DGVTLGQEIR RRLPTIPIVL NSGYSDVLAD
GGRHGFSLIH KPYSVDELSR VLRQVMAGRA TSSEQAPSE
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