Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3309 |
Symbol | |
ID | 5540807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4318599 |
End bp | 4321301 |
Gene Length | 2703 bp |
Protein Length | 900 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895427 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001433378 |
Protein GI | 156743249 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.269875 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.342346 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTCAC GCATTCTGGT CGTCGATGAC CACGACTACA TTCGTCATCT CCTGGTGCGC CTGCTCACGA GTCAGGGGCA TCAGACAAGC GTCGCTACGG GCGGGCGAGA AGCACTAGAC CTGCTCTCGC AGCAGTCATT CGATCTGGTG CTGCTCGATC TGATGATGCC CGATATGAAC GGCATCGAGG TGCTGGAGCA GTTGCGCCAG CAGAACGTTA TCTATCACAC GCCGGTTATC GTCGTTTCTG GGGTGCACGA CCTGGATATG GTTGCTCAGT GCATCGAACT CGGCGCCGAC GATTATCTGT TCAAACCGTT CAACGATGTG CTCTTGCGCG CGCGGGTGAA TGCCTCGCTC GAGCGCAAGA TGCTGCGTGA TCACGAGCGC GCATACCTGG AGCGGCGCCT GCGCACCATC GACCACGAAA CCTCCGATGA ACCGGCGATT GTGACCACTC CACCAGCGAC GATTGATATG GCGCTGCTGA CGGCGCTCGA TGCGTTGGAG CGCTCGCAAC GCGAGCGCGA CCGCGTGGAA GCAGAATTAC GCAGGCTGAA TGCCACGCTC GAAGAGCGAG TTGCCGAACG CAGCGCCGCT GCTGAGCAAA GCGCCGCAGC GCTGCGCCAG CAGATGCTGA CGCAGCAATC GATCCTCGAC AGCATCGGCG ATGCGATTGT TGTGATTGAC GGCGACGGTC GGCTGTTACA CGTCAATCCG GCGGCACGCG ATCTGTTCGG CGACCGCGTC GTCGATCTGA CGCCCCAGGC TACGGCACGT GCGTCTGTGC TGCTGCTTGC CGATGACACT TCCTGCCCGC CCGACACCCT GCCGCTGGCG GTTGCGCTTC GTGGCGAGGC GCTCGATGGC GCCGAGTTTC TGCTGGCGTC ACCCGACTCC GCCAAACGTT GGTTGAGCGT CACTGCCCGT CCACTGCGTG ACCTCGATGG AGCGATCAGT GGCGCTGTAG CGGTGTTTCG CGACGTAACC ATAACGCGCC AGGCGGCTGA AGCGCTGCGC GCCAGCGAAG AACGCTATGC GCTGGCGGCT CAGGCTGCCA ACGACGGTCT GTGGGATTGG GATCTTACGA CGGGCAAGAT TTATTTTTCG CAACGCTGGA AAGCATCGAT TGGCTTCCAG GACCACGAGA TCGGCAATGA TCCATCCGAA TGGTTCGATC GCGTCCACCC CGATGACCGC GAGGGATTGG AGGTGCGTCT GGTTGCTCAT CTCCACCGCC TGATCTCCGG GTTCGAATAC GAATATCGTA TGCGGCATCA CGATGGCGCC TACCGCTGGA TGAGTTGTCG TGGCATTGCC GTATGGAATG CCGGCGGACA GGCAGTGCGG ATCGTTGGAT CGCAAACCGA CATCAACGCG CGCAAACTGG TAGAGCAACG TCTGCTGCAC GAGGCATTGC ACGACAGCCT GACCGGACTC GCCAACCGTT CGTGCTTTAT GGACCGATTG GAGCACGTCG TTGCGCGCAC CCGGCGCGGC GCTTCATCCC CATTTGCGGT TCTCTTTCTC GACCTTGATC GGTTCAAACT CATTAATGAC AGCCTCGGTC ACGTGGTTGG CGATCAATTG CTCATTGCCA TTGCGCGACG CCTCGAACGC TGCCTGCGAC CTGGCGACAC GCTGGCGCGT CTCGGCGGTG ACGAGTTCGC CGTGCTCCTC GAAGATTTGA GCGAACCACA GGCGGCGCTG ACGGTGGCGG AACGCATCCT GCGCCTGCTC GAAGAACCGT TCCATCTCGC GGGACATGAG GTGTTCAGCA GCGCCAGCAT CGGTATTGCG CTCAACGACA GCACGCGCTA TCATTCGCCT GCCGATGTGC TGCGCGACGC AGACACGGCA ATGTACCACG CCAAGATGGA AGGACGATCA CGTTATGCCG TCTTTCACTC CGCAATGCAC GACCGCGCCC GCCATCGCTT GCAGATTGAG ACCGATCTGC GCCGCGGCGT CGAACGCAAC GAGTTTTTCG TCGTCTATCA ACCGATCGTC GAACTCAACA CACAGCAGAC CGTCGGGTTC GAGGCATTGC TCCGCTGGCG GCATCCGCAC CGCGGTATCA TTAGTCCAAC CGAGTTCATC GACGTGGCTG AAGAGACCGG CTTGATCGTC CCGATTGGTC AGATGGTGCT GCGCGAAGCA TGTCGCCAAT TGAGCGAGTG GAGACAACGG CATCCGGCAC GAACGATCAC CATGCACATC AATCTTTCAC CTCGCCAGAT CGCCGATCCG CACCTTGTCG ATGACACCAT CGCGTTGCTC AACGCATACC ATCTCGATGC AGGCTCCCTT CACCTCGAAA TCACCGAGAC GGCGATCATC GAACACGGTG ACATCGCCAG CCGGGCGCTG ATGCACCTGC GCTCTCTCGG AGCGCAGATT TGCATCGATG ATTTTGGCGC CGGCTACTCG TCGCTCAGCT ATCTGCATCG CTTTCCTATC GGGACGATCA AGATTGATCG CTCGTTTATC AGCCAGATTC ACCACAGCCA CGAAAATGCA GAGATCGTTC GCACCATCAT TGCACTGGCG CATTCCCTGG GAATGACCGT CATCGCTGAA GGCGCCGAAA CCGAGGAACA ACTGGCGCGC CTGCGTTCGA TGTCCTGCCC GTATGGGCAG GGCTGGCTCT TCGCGCGAGC GCTTGAACCG GCGGCGGCTA CTGCTCTGCT CGATGCCGCA TGA
|
Protein sequence | MPSRILVVDD HDYIRHLLVR LLTSQGHQTS VATGGREALD LLSQQSFDLV LLDLMMPDMN GIEVLEQLRQ QNVIYHTPVI VVSGVHDLDM VAQCIELGAD DYLFKPFNDV LLRARVNASL ERKMLRDHER AYLERRLRTI DHETSDEPAI VTTPPATIDM ALLTALDALE RSQRERDRVE AELRRLNATL EERVAERSAA AEQSAAALRQ QMLTQQSILD SIGDAIVVID GDGRLLHVNP AARDLFGDRV VDLTPQATAR ASVLLLADDT SCPPDTLPLA VALRGEALDG AEFLLASPDS AKRWLSVTAR PLRDLDGAIS GAVAVFRDVT ITRQAAEALR ASEERYALAA QAANDGLWDW DLTTGKIYFS QRWKASIGFQ DHEIGNDPSE WFDRVHPDDR EGLEVRLVAH LHRLISGFEY EYRMRHHDGA YRWMSCRGIA VWNAGGQAVR IVGSQTDINA RKLVEQRLLH EALHDSLTGL ANRSCFMDRL EHVVARTRRG ASSPFAVLFL DLDRFKLIND SLGHVVGDQL LIAIARRLER CLRPGDTLAR LGGDEFAVLL EDLSEPQAAL TVAERILRLL EEPFHLAGHE VFSSASIGIA LNDSTRYHSP ADVLRDADTA MYHAKMEGRS RYAVFHSAMH DRARHRLQIE TDLRRGVERN EFFVVYQPIV ELNTQQTVGF EALLRWRHPH RGIISPTEFI DVAEETGLIV PIGQMVLREA CRQLSEWRQR HPARTITMHI NLSPRQIADP HLVDDTIALL NAYHLDAGSL HLEITETAII EHGDIASRAL MHLRSLGAQI CIDDFGAGYS SLSYLHRFPI GTIKIDRSFI SQIHHSHENA EIVRTIIALA HSLGMTVIAE GAETEEQLAR LRSMSCPYGQ GWLFARALEP AAATALLDAA
|
| |