| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3814 |
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| Symbol | |
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| ID | 8546207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 5238821 |
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| End bp | 5242216 |
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| Gene Length | 3396 bp |
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| Protein Length | 1131 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 646388484 |
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| Product | response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003268207 |
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| Protein GI | 262196998 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.257486 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAGGAC GTATCAAAAT TGTCGCCATC GTCGACGAGC CCGCGCTGGC TGAAGAGGTC
CGTGGCGAGC TGTCGCGTCA GTACGACCTG GACATCGCCA TCACCACCGA GGGTGCGCGC
GCCAGGCTCG AGGCCAACCC CGACATCGAC GTGGTCTTGC TGCCCGAGTT CAGCGACGAG
GGTCCGGCCG TGGCCCGCGC CGCCAACCTC GGCGAGCTGC GCCCCGATGT CCCCATCCTC
GTGGTCTCGG CCGATCCCGA GAGCTCCGAT CTGAACACGG CCATCCACGG CCAGCAGATC
GCGGGCGCGG TGCAGGTGCC GTGGCGCTCG GGCGAGCTGT CCATGGCGGT CGAGCGCACG
GCCGAATTCG GCCGCCTGCG CCGCGAGCTC GACAGCATGC GCGACCGCAT GCAGCGCCGC
CTCGACGCGC TGTCGATCAT GAACGAGCTG GCCTCGGCGA TCGCCGACTC CGGCACCCAC
GACCAGCTCT CGCGCATCCT GTCGCAGGGT CTGTATCTCA TCGTGCGCGG CGTCGATATC
GGCGTCGCCT TCCTCACCAT CGACAACGGC TACGCCGGCT TCCTGCACCT GCACTGCCAC
CAGCCCTCGG ATCACGGCGC GCTGCGCACC GCGCGCGACC GCTGCATGGA GATCTTCCGC
TCGCTCACCG GTCGCATCAT CGAGGAGGAC AAGCTCACGG TCGACATCTC GGGCGACCGC
CTCAACCTGG GCGATCACGC CCGCCACGAG GGCTCGTTCT CGCATGTGCC GATCTACGTC
GAGGGCGCCG TGGTCGGCAT CATCCTCGCG GGCACGACCC CGGCCAAGCA GCTCACGGCC
GACGAGGACA AGCTGATGTT CTTCCTGGCC GCGCGCGCGG CCGAGGCCAT GAAGCGTCTG
TCGGCCCAGC GCGACAACGA GCGCCGCAAG CTCAGCCTGA TGATCGAGGC CATGGCCGAC
GGCCTGATCT ACGCCTACGC CAGCAACAAC CGGGTGCTGA TCAACCCGGC CGCGCGGCAG
ATGCTCGGCA TCGACGCCGA GCAGCCGGTG ACCACGCAGT TCCTCAAGGA GAAGCTCGGC
TTCTACCCCT TCGACCTGGT GGCCGCGCGC AAGCAGAGCC AGGGCCCGAG CGAGTCGGTG
CGCGAAGAGG TGCGCGTGGG CACGCGCTCG TTCCACTCGA TCGTCTCGCC GGTGCGCGAC
CGCTCCGGCA AGCTGCTCGG CGTGGTCGTG GTGCTGCGCG ATATGACCGA GGCCAAAGAG
CTGGCGCGGC GCCAGAGCGA GTTCGTCTCG GTGGTGTCGC ACGAGCTGCG CACGCCGCTC
ACCTCGATCA CGGGCGCGCT CGACATCGTG CTCAGCGGGT ATTCCGGACG CGTGCCCGAT
AAACAGCAGC GCTATCTCAA GATGGCGCGC GAGTCCTGTG CGGTGCTCAA CGCCTTGGTC
GACGACCTGC TCGACACCGC CAACGCCGAC GACGGCGACA TGCCCGTGCA CCTGCGGCCG
CTGGTGGTCG ACGACCTGGC CCTCGAGGTC ATGGATCGCT ACCACGAGGA GGCCGAGACC
AAGCGCATCG AGATCCGCCT CGAGCGCGAG GAGGAGAACG TCCGCATCGT CGGCGACGGC
GACCGCCTCA GCCAGGTGCT CACCAACCTG CTGTCCAACG CGGTCAAGTT CACGACCGTC
CAGGGCCAGG TGTCGATCGA CATCTTCGGC AAGGCCGTGT CCGACGCCTT TGTGTGCATC
TCGGTGTACA ACAGCGGCAA GCCCATCCCG CGCGCGGCCA GCGAGCGCGT GTTCGACAAG
TTCGAGCAGC TCGACGACGT CACCACCCGC AAGGTCGGCG GCACCGGCCT GGGCCTGCCC
ATCTCGCGCG CCATCATCGA GGCCCACGGC GGCCGCATCT GGCTCGAGTC GCTGCCCACC
GGCACCCGCT TCGTGTTCAC CCTGCCGATC ACGCCCGACG CGATCGAGAC CAGCGCGCAG
CAGCAGCAGC AGAGCGACGA CGAGGAAGGC GGCACGCGCA ACACCGTGCT CATCGTCGCC
GAACAGTGGC GCGCCAGCTA CGCGCTCAAG GGCATCCTGC TCATGGCCGG CTTCCAGGTG
CTCATCGCCG AGGACGCCGA CGAGGCGCTG GCGCTCACCC GCGAGGAGCA GCCCAGCCTG
GCCGTCATCT ACACCGACAC CCCGGACCGC GACGGCCTGG CCCTGGTCGA GATCTTCCGC
CACGACCCCG ACACCCGCAA GACCGCGGTG CTGGTCATCT CGGGCACCGA GGACCTGCGC
GACGCGGCCT CGCGGGCCAA CGCCAACGAG TTTTTGCACA CGCCCCTGGC CCCGGGCGCC
TTTGTCGAGG CGTGCACGCG GCTCATCCAG GAGACCGGGC GGGTCAACGC CCACCGCGTG
CTGGTGGTCG ACGACGACGA CGCCATCCGC GCCATCTGCC GCGAGGTGCT CGAGAACGCG
GGCTACGCGG TGCGCGACGT GCCCGACGGC TACGCTGCGC TCACCGAGAC CAAGCGCTAT
CGCCCCGACC TGCTGCTGCT CGACATCATG ATGCCCGAGA TGGACGGCTT CCAGACCGCC
GAGCGGCTCA AGTCCGACCC CTCGACCTCG ATGACGCCGA TCATCTTCCT CTCGGCCAAG
GGCGCGACCG CCGACAAGGT GCGCGCCTTC CGCAGCGGCG CCGAGGACTA CGTGACCAAG
CCCTTCGACG CCGCCGAGCT GGTCGCGCGC GTGTCCAAGA CCGTCGAGCG CCACTCGCGC
GAGCTCGGCG CCTCGCCGAC CACGCAGTTG CCGGGCGCCG ACGCCATCGA GAACGAGATC
GAGCGCCGGC TCAAGCGCCG CGGCGACGAC GCCATCTGCT ACCTCGACCT CGACAACCTC
AAGGCGTTCA ACGACTACTA CGGCTACGCC AAGGCCGACG GCATCATCCG CCAGATCGGC
GATGTCATCC GCGACGTCAT CGCGCGCGAG GGCACGGGCT CGGACTTCAT CGGCCACATC
GCCGGCGACG ACTTCGTGTT CATCACCAGC GGCGAGCGCG TGGACAAAGT GTGCCGAACC
ATCTGCGGCA CCTTCGACCG CCTGGTCCCG CTCTACTACA ACAAGCACGA CCGCGAAAAA
GGCTTCATCG AAGCCGAGGA CCGCTTCGGC GTGATGCGCA AGTTCCCGAT CATGAGCGTG
TCGATCGCCG CGGTCACGGT CGAGGGCAGC GACATCCAGA CCTACAGCGA CCTCGCCGCT
GTGGCCGCCC AGGGCAAGAA GATGGCCAAG GAAATCCCCG GCTCGGCCTA CGTGCGCGAC
GACAAATCGC TGCTCGGCAG CAAGCCGCCG CCCAGCACCA AGGCCAGCTC GGGCGGGGCG
GTCAAAAAAG ACGAAGCCGC CTCCTCCGAG GCGTAG
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| Protein sequence | MAGRIKIVAI VDEPALAEEV RGELSRQYDL DIAITTEGAR ARLEANPDID VVLLPEFSDE
GPAVARAANL GELRPDVPIL VVSADPESSD LNTAIHGQQI AGAVQVPWRS GELSMAVERT
AEFGRLRREL DSMRDRMQRR LDALSIMNEL ASAIADSGTH DQLSRILSQG LYLIVRGVDI
GVAFLTIDNG YAGFLHLHCH QPSDHGALRT ARDRCMEIFR SLTGRIIEED KLTVDISGDR
LNLGDHARHE GSFSHVPIYV EGAVVGIILA GTTPAKQLTA DEDKLMFFLA ARAAEAMKRL
SAQRDNERRK LSLMIEAMAD GLIYAYASNN RVLINPAARQ MLGIDAEQPV TTQFLKEKLG
FYPFDLVAAR KQSQGPSESV REEVRVGTRS FHSIVSPVRD RSGKLLGVVV VLRDMTEAKE
LARRQSEFVS VVSHELRTPL TSITGALDIV LSGYSGRVPD KQQRYLKMAR ESCAVLNALV
DDLLDTANAD DGDMPVHLRP LVVDDLALEV MDRYHEEAET KRIEIRLERE EENVRIVGDG
DRLSQVLTNL LSNAVKFTTV QGQVSIDIFG KAVSDAFVCI SVYNSGKPIP RAASERVFDK
FEQLDDVTTR KVGGTGLGLP ISRAIIEAHG GRIWLESLPT GTRFVFTLPI TPDAIETSAQ
QQQQSDDEEG GTRNTVLIVA EQWRASYALK GILLMAGFQV LIAEDADEAL ALTREEQPSL
AVIYTDTPDR DGLALVEIFR HDPDTRKTAV LVISGTEDLR DAASRANANE FLHTPLAPGA
FVEACTRLIQ ETGRVNAHRV LVVDDDDAIR AICREVLENA GYAVRDVPDG YAALTETKRY
RPDLLLLDIM MPEMDGFQTA ERLKSDPSTS MTPIIFLSAK GATADKVRAF RSGAEDYVTK
PFDAAELVAR VSKTVERHSR ELGASPTTQL PGADAIENEI ERRLKRRGDD AICYLDLDNL
KAFNDYYGYA KADGIIRQIG DVIRDVIARE GTGSDFIGHI AGDDFVFITS GERVDKVCRT
ICGTFDRLVP LYYNKHDREK GFIEAEDRFG VMRKFPIMSV SIAAVTVEGS DIQTYSDLAA
VAAQGKKMAK EIPGSAYVRD DKSLLGSKPP PSTKASSGGA VKKDEAASSE A
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