More than 300 homologs were found in PanDaTox collection
for query gene Tfu_2959 on replicon NC_007333
Organism: Thermobifida fusca YX



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_2959  LuxR response regulator receiver  100 
 
 
225 aa  449  1e-125  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  30.26 
 
 
234 aa  94.7  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  29.82 
 
 
234 aa  93.2  3e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  31.28 
 
 
231 aa  90.9  2e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  30 
 
 
253 aa  90.1  3e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  29.28 
 
 
237 aa  89.4  4e-17  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  29.28 
 
 
237 aa  87.4  2e-16  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  27.49 
 
 
212 aa  85.9  5e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  31.8 
 
 
220 aa  84.7  0.000000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  29.67 
 
 
210 aa  83.6  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  31.34 
 
 
222 aa  83.2  0.000000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  29.33 
 
 
217 aa  82.8  0.000000000000004  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  29.28 
 
 
250 aa  82.4  0.000000000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  30.52 
 
 
219 aa  82.4  0.000000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  28.9 
 
 
242 aa  81.6  0.000000000000009  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  31.19 
 
 
225 aa  81.3  0.00000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  29.81 
 
 
219 aa  80.1  0.00000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  32.85 
 
 
221 aa  80.5  0.00000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0094  two component LuxR family transcriptional regulator  32.08 
 
 
222 aa  80.5  0.00000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  30.19 
 
 
227 aa  80.9  0.00000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  28.18 
 
 
222 aa  79.7  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  29.03 
 
 
224 aa  78.6  0.00000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_5070  two component transcriptional regulator, LuxR family  27.88 
 
 
210 aa  78.2  0.00000000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.744929 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  28.91 
 
 
303 aa  77.4  0.0000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  29.58 
 
 
218 aa  78.2  0.0000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  31.53 
 
 
236 aa  77.8  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  31.94 
 
 
227 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  29.91 
 
 
238 aa  77.4  0.0000000000002  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.23 
 
 
217 aa  77  0.0000000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  28.64 
 
 
215 aa  77  0.0000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  31.73 
 
 
213 aa  76.6  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  27.27 
 
 
218 aa  76.6  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  28.32 
 
 
214 aa  76.3  0.0000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  33.77 
 
 
220 aa  76.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  27.44 
 
 
209 aa  76.6  0.0000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  28.24 
 
 
216 aa  76.3  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  28.44 
 
 
236 aa  75.9  0.0000000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_002936  DET1531  LuxR family DNA-binding response regulator  26.58 
 
 
219 aa  75.5  0.0000000000006  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.000956559  n/a   
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  27.78 
 
 
230 aa  75.1  0.0000000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  30.33 
 
 
224 aa  75.1  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  27.52 
 
 
225 aa  74.7  0.000000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  31.43 
 
 
214 aa  74.7  0.000000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_39510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  28.99 
 
 
216 aa  74.3  0.000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.657091 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  29.38 
 
 
228 aa  74.7  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  28.64 
 
 
220 aa  73.9  0.000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  29.36 
 
 
239 aa  73.9  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  28.7 
 
 
214 aa  73.9  0.000000000002  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  29.81 
 
 
217 aa  73.9  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  34.56 
 
 
210 aa  73.9  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.836709 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  27.62 
 
 
241 aa  73.2  0.000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  29.09 
 
 
218 aa  73.2  0.000000000003  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013730  Slin_4823  two component transcriptional regulator, LuxR family  29.82 
 
 
214 aa  73.2  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.103693  normal  0.11387 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  29.52 
 
 
215 aa  73.2  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  26.55 
 
 
228 aa  73.2  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  29.09 
 
 
218 aa  73.2  0.000000000003  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  27.57 
 
 
215 aa  72.8  0.000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  31.16 
 
 
226 aa  72.8  0.000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  28.9 
 
 
226 aa  72.8  0.000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_0747  two component transcriptional regulator, LuxR family  25.97 
 
 
232 aa  72.4  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.643618  normal  0.38139 
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  29.81 
 
 
219 aa  72.4  0.000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  30.37 
 
 
212 aa  72.4  0.000000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  29.05 
 
 
214 aa  72.8  0.000000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  30.51 
 
 
236 aa  72.4  0.000000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  29.68 
 
 
242 aa  72.4  0.000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  28.51 
 
 
236 aa  72.4  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013159  Svir_01100  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  27.49 
 
 
214 aa  72.4  0.000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2373  two component transcriptional regulator, LuxR family  29.77 
 
 
192 aa  72  0.000000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0279  response regulator receiver protein  30.62 
 
 
216 aa  71.6  0.000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  29.19 
 
 
217 aa  71.6  0.000000000009  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_013757  Gobs_1115  two component transcriptional regulator, LuxR family  28.64 
 
 
225 aa  71.6  0.000000000009  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0541844  n/a   
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  30.18 
 
 
210 aa  70.9  0.00000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  28.1 
 
 
215 aa  71.2  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  26.36 
 
 
217 aa  70.9  0.00000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  27.65 
 
 
224 aa  71.6  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_010718  Nther_0692  two component transcriptional regulator, LuxR family  28.91 
 
 
213 aa  71.2  0.00000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  28.85 
 
 
233 aa  71.2  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_014158  Tpau_0354  two component transcriptional regulator, LuxR family  29.9 
 
 
222 aa  71.2  0.00000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  26.32 
 
 
210 aa  70.9  0.00000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  27.91 
 
 
219 aa  71.2  0.00000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  26.36 
 
 
217 aa  70.9  0.00000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  31.22 
 
 
216 aa  70.5  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011083  SeHA_C2486  transcriptional regulator NarP  31.94 
 
 
215 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.187807  normal  0.0115945 
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011080  SNSL254_A2430  transcriptional regulator NarP  31.94 
 
 
215 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.426027  normal  0.504703 
 
 
-
 
NC_011205  SeD_A2589  transcriptional regulator NarP  31.94 
 
 
215 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.167087 
 
 
-
 
NC_013739  Cwoe_0253  two component transcriptional regulator, LuxR family  32.57 
 
 
218 aa  70.9  0.00000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.649746 
 
 
-
 
NC_013132  Cpin_2103  two component transcriptional regulator, LuxR family  26.07 
 
 
210 aa  70.5  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  26.44 
 
 
210 aa  70.5  0.00000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  26.32 
 
 
210 aa  70.5  0.00000000002  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  26.44 
 
 
210 aa  70.5  0.00000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_006274  BCZK1321  response regulator  26.32 
 
 
210 aa  70.1  0.00000000003  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  25.35 
 
 
219 aa  70.1  0.00000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  29.33 
 
 
227 aa  70.1  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  25.46 
 
 
218 aa  69.7  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2472  transcriptional regulator NarP  31.63 
 
 
215 aa  70.1  0.00000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  26.32 
 
 
210 aa  69.7  0.00000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
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