More than 300 homologs were found in PanDaTox collection
for query gene Sala_1223 on replicon NC_008048
Organism: Sphingopyxis alaskensis RB2256



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  59.8 
 
 
685 aa  786    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  59.29 
 
 
666 aa  773    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  57.75 
 
 
667 aa  695    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  54.46 
 
 
652 aa  671    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  61.09 
 
 
667 aa  793    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  53.21 
 
 
696 aa  657    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  61.72 
 
 
666 aa  789    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  56.91 
 
 
662 aa  728    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  56.55 
 
 
671 aa  696    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  54.16 
 
 
682 aa  680    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  56.27 
 
 
682 aa  704    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  56.68 
 
 
668 aa  665    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  56.78 
 
 
667 aa  709    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  61.28 
 
 
666 aa  782    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  56.27 
 
 
682 aa  701    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  56.27 
 
 
682 aa  705    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  57.27 
 
 
667 aa  699    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  59.76 
 
 
667 aa  759    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  57.61 
 
 
684 aa  693    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  55.46 
 
 
671 aa  676    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  61.28 
 
 
695 aa  781    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  54.72 
 
 
669 aa  686    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  52.44 
 
 
669 aa  648    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  59.8 
 
 
671 aa  770    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  60.79 
 
 
667 aa  788    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  56.46 
 
 
662 aa  701    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  60.36 
 
 
667 aa  790    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  56.69 
 
 
671 aa  705    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  54.13 
 
 
678 aa  701    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  83.8 
 
 
673 aa  1125    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  58.38 
 
 
670 aa  743    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  55.04 
 
 
691 aa  682    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  60.64 
 
 
681 aa  773    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  59.94 
 
 
680 aa  778    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  53.57 
 
 
684 aa  662    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  58.94 
 
 
669 aa  749    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  56.12 
 
 
671 aa  700    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  54.89 
 
 
682 aa  676    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  56.54 
 
 
671 aa  712    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  58.33 
 
 
673 aa  726    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  54.72 
 
 
682 aa  687    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  57.27 
 
 
691 aa  700    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  56.62 
 
 
671 aa  689    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  57.35 
 
 
673 aa  706    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  54.57 
 
 
669 aa  684    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  60.15 
 
 
676 aa  791    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
668 aa  1362    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  56.7 
 
 
668 aa  699    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  55.83 
 
 
678 aa  708    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  75 
 
 
660 aa  992    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  56.09 
 
 
670 aa  705    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  56.41 
 
 
682 aa  706    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  53.22 
 
 
675 aa  650    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  56.54 
 
 
671 aa  700    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  58.54 
 
 
675 aa  731    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  57.37 
 
 
667 aa  686    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  45.13 
 
 
656 aa  571  1e-161  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  45.2 
 
 
655 aa  571  1e-161  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.16 
 
 
691 aa  560  1e-158  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  42.63 
 
 
681 aa  517  1.0000000000000001e-145  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46.02 
 
 
667 aa  516  1.0000000000000001e-145  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.69 
 
 
666 aa  511  1e-143  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.6 
 
 
668 aa  501  1e-140  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0018  biotin carboxylase  46.76 
 
 
673 aa  496  1e-139  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  45.66 
 
 
643 aa  496  1e-139  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  46.04 
 
 
670 aa  496  1e-139  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.81 
 
 
663 aa  496  1e-139  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  44.1 
 
 
661 aa  498  1e-139  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  46.61 
 
 
673 aa  496  1e-139  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  42.31 
 
 
665 aa  492  9.999999999999999e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_010511  M446_2316  carbamoyl-phosphate synthase L chain ATP-binding  45.97 
 
 
662 aa  494  9.999999999999999e-139  Methylobacterium sp. 4-46  Bacteria  normal  0.0459588  normal  0.101585 
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  42.21 
 
 
686 aa  495  9.999999999999999e-139  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4067  acetyl-CoA carboxylase, biotin carboxylase, putative  44.81 
 
 
650 aa  489  1e-137  Pseudomonas putida KT2440  Bacteria  normal  0.544109  unclonable  0.000000957509 
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  43.11 
 
 
649 aa  492  1e-137  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1774  carbamoyl-phosphate synthase L chain, ATP-binding  44.54 
 
 
650 aa  491  1e-137  Pseudomonas putida F1  Bacteria  hitchhiker  0.00809985  hitchhiker  0.00202818 
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  42.94 
 
 
649 aa  491  1e-137  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_007492  Pfl01_3659  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.08 
 
 
649 aa  491  1e-137  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00262153  normal  0.0752572 
 
 
-
 
NC_008752  Aave_4351  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.49 
 
 
677 aa  489  1e-137  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  45.96 
 
 
679 aa  489  1e-137  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  43.91 
 
 
662 aa  490  1e-137  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  41.69 
 
 
653 aa  486  1e-136  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  46.23 
 
 
674 aa  485  1e-136  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  44.28 
 
 
675 aa  486  1e-136  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4090  carbamoyl-phosphate synthase L chain, ATP-binding  44.31 
 
 
660 aa  486  1e-136  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.734303  normal 
 
 
-
 
NC_010002  Daci_5970  carbamoyl-phosphate synthase L chain ATP-binding  46.09 
 
 
672 aa  489  1e-136  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  44.2 
 
 
666 aa  488  1e-136  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_008048  Sala_1533  carbamoyl-phosphate synthase L chain, ATP-binding  46.04 
 
 
612 aa  488  1e-136  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.385954  normal 
 
 
-
 
NC_008347  Mmar10_1727  carbamoyl-phosphate synthase L chain, ATP-binding  44.36 
 
 
667 aa  487  1e-136  Maricaulis maris MCS10  Bacteria  normal  0.807685  normal  0.290764 
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  44.61 
 
 
666 aa  483  1e-135  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_008463  PA14_26670  putative biotin carboxylase/biotin carboxyl carrier protein  43.26 
 
 
661 aa  484  1e-135  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.795664  normal 
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.81 
 
 
672 aa  484  1e-135  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_010322  PputGB1_3665  carbamoyl-phosphate synthase L chain ATP-binding  44.44 
 
 
650 aa  483  1e-135  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000243321  hitchhiker  0.000000000183935 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  46.15 
 
 
674 aa  483  1e-135  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1809  carbamoyl-phosphate synthase L chain ATP-binding  44.79 
 
 
650 aa  485  1e-135  Pseudomonas putida W619  Bacteria  normal  normal  0.202229 
 
 
-
 
NC_009656  PSPA7_2263  putative biotin carboxylase/biotin carboxyl carrier protein  43.19 
 
 
661 aa  483  1e-135  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0039  carbamoyl-phosphate synthase L chain ATP-binding  43.85 
 
 
655 aa  484  1e-135  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.540073  n/a   
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  44.15 
 
 
670 aa  480  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_009439  Pmen_2030  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.51 
 
 
644 aa  482  1e-134  Pseudomonas mendocina ymp  Bacteria  normal  0.0317693  normal  0.435789 
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  42.82 
 
 
654 aa  481  1e-134  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  41.39 
 
 
689 aa  481  1e-134  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
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