More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_0123 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  61.15 
 
 
667 aa  736    Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5237  carbamoyl-phosphate synthase L chain, ATP-binding  67.31 
 
 
665 aa  820    Burkholderia cenocepacia HI2424  Bacteria  normal  0.578975  normal  0.758885 
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  90.65 
 
 
712 aa  1180    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  51.99 
 
 
666 aa  674    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  51.31 
 
 
681 aa  704    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  52.02 
 
 
649 aa  643    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1669  3-methylcrotonoyl-CoA carboxylase, alpha subunit  50.37 
 
 
674 aa  643    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4719  Carbamoyl-phosphate synthase L chain ATP-binding  59.94 
 
 
667 aa  717    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0805  putative acetyl-CoA carboxylase, biotin carboxylase  63.52 
 
 
664 aa  747    Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4689  Carbamoyl-phosphate synthase L chain ATP-binding  63.87 
 
 
692 aa  790    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0311  3-methylcrotonoyl-CoA carboxylase, alpha subunit  52.69 
 
 
706 aa  671    Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  59.26 
 
 
666 aa  751    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2831  carbamoyl-phosphate synthase L chain ATP-binding  50.29 
 
 
680 aa  645    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  65.38 
 
 
672 aa  790    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_008784  BMASAVP1_0539  putative acetyl-CoA carboxylase, biotin carboxylase  63.66 
 
 
664 aa  749    Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  74.48 
 
 
674 aa  966    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1463  3-methylcrotonoyl-CoA carboxylase, alpha subunit  71.83 
 
 
674 aa  911    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1716  carbamoyl-phosphate synthase L chain, ATP-binding  50.07 
 
 
689 aa  635    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3469  carbamoyl-phosphate synthase L chain ATP-binding  67.5 
 
 
670 aa  815    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_0651  putative acetyl-CoA carboxylase, biotin carboxylase  63.66 
 
 
664 aa  749    Burkholderia mallei NCTC 10229  Bacteria  normal  0.547961  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  53.17 
 
 
662 aa  685    Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0468  biotin carboxylase subunit of acetyl-CoA carboxylase  63.66 
 
 
666 aa  751    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0847  carbamoyl-phosphate synthase L chain, ATP-binding  56.59 
 
 
730 aa  688    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  98.52 
 
 
674 aa  1347    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0426  3-methylcrotonoyl-CoA carboxylase, alpha subunit  68.55 
 
 
665 aa  813    Burkholderia sp. 383  Bacteria  normal  0.967801  normal 
 
 
-
 
NC_008752  Aave_4351  3-methylcrotonoyl-CoA carboxylase, alpha subunit  61.44 
 
 
677 aa  738    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  48.66 
 
 
661 aa  637    Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  59 
 
 
668 aa  729    Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5970  carbamoyl-phosphate synthase L chain ATP-binding  61.88 
 
 
672 aa  746    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3759  3-methylcrotonoyl-CoA carboxylase, alpha subunit  60.5 
 
 
672 aa  749    Acidovorax sp. JS42  Bacteria  normal  normal  0.746239 
 
 
-
 
NC_011992  Dtpsy_3040  Carbamoyl-phosphate synthase L chain ATP-binding  60.65 
 
 
672 aa  751    Acidovorax ebreus TPSY  Bacteria  normal  0.233889  n/a   
 
 
-
 
NC_009997  Sbal195_2976  carbamoyl-phosphate synthase L chain ATP-binding  50.15 
 
 
680 aa  645    Shewanella baltica OS195  Bacteria  normal  normal  0.870775 
 
 
-
 
NC_011663  Sbal223_1527  Carbamoyl-phosphate synthase L chain ATP-binding  50.29 
 
 
685 aa  647    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0950  biotin carboxylase  65.14 
 
 
666 aa  761    Burkholderia thailandensis E264  Bacteria  normal  0.790249  n/a   
 
 
-
 
NC_009665  Shew185_2849  carbamoyl-phosphate synthase L chain ATP-binding  50.3 
 
 
686 aa  645    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  58.24 
 
 
662 aa  716    Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_010552  BamMC406_5118  carbamoyl-phosphate synthase L chain ATP-binding  67.16 
 
 
666 aa  803    Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3830  carbamoyl-phosphate synthase L chain, ATP-binding  58.62 
 
 
674 aa  701    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  60 
 
 
675 aa  728    Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3559  carbamoyl-phosphate synthase L chain ATP-binding  64.64 
 
 
670 aa  790    Burkholderia phymatum STM815  Bacteria  normal  normal  0.733851 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  60.62 
 
 
663 aa  751    Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_010515  Bcenmc03_5035  carbamoyl-phosphate synthase L chain ATP-binding  67.76 
 
 
665 aa  823    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.70526  normal 
 
 
-
 
NC_009439  Pmen_2030  3-methylcrotonoyl-CoA carboxylase, alpha subunit  52.54 
 
 
644 aa  640    Pseudomonas mendocina ymp  Bacteria  normal  0.0317693  normal  0.435789 
 
 
-
 
NC_007952  Bxe_B0963  3-methylcrotonoyl-CoA carboxylase, alpha subunit  64.46 
 
 
679 aa  777    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.5845 
 
 
-
 
NC_009079  BMA10247_A1605  putative acetyl-CoA carboxylase, biotin carboxylase  63.66 
 
 
664 aa  749    Burkholderia mallei NCTC 10247  Bacteria  normal  0.585456  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  57.9 
 
 
666 aa  684    Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  60.68 
 
 
670 aa  751    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0342  carbamoyl-phosphate synthase L chain, ATP-binding  51.96 
 
 
704 aa  682    Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  73.76 
 
 
679 aa  937    Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  48.66 
 
 
661 aa  637    Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3130  carbamoyl-phosphate synthase L chain, ATP-binding  67.31 
 
 
665 aa  820    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2053  putative acetyl-CoA carboxylase, biotin carboxylase  63.66 
 
 
666 aa  750    Burkholderia pseudomallei 668  Bacteria  normal  0.698368  n/a   
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  51.92 
 
 
700 aa  655    Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A1956  putative acetyl-CoA carboxylase, biotin carboxylase  63.52 
 
 
664 aa  749    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2116  carbamoyl-phosphate synthase L chain ATP-binding  61.58 
 
 
692 aa  749    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.278717 
 
 
-
 
NC_008228  Patl_2928  carbamoyl-phosphate synthase L chain, ATP-binding  51.59 
 
 
675 aa  644    Pseudoalteromonas atlantica T6c  Bacteria  normal  0.321789  n/a   
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
674 aa  1365    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  60.89 
 
 
660 aa  745    Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_008391  Bamb_4585  carbamoyl-phosphate synthase L chain, ATP-binding  67.31 
 
 
666 aa  810    Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.747689 
 
 
-
 
NC_008321  Shewmr4_2325  3-methylcrotonoyl-CoA carboxylase, alpha subunit  50.66 
 
 
679 aa  642    Shewanella sp. MR-4  Bacteria  normal  normal  0.676879 
 
 
-
 
NC_008322  Shewmr7_2397  3-methylcrotonoyl-CoA carboxylase, alpha subunit  50.66 
 
 
679 aa  645    Shewanella sp. MR-7  Bacteria  normal  0.63603  normal  0.616301 
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  51.71 
 
 
649 aa  634  1e-180  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  54.04 
 
 
673 aa  630  1e-179  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_009092  Shew_2573  carbamoyl-phosphate synthase L chain, ATP-binding  49.93 
 
 
677 aa  629  1e-179  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2800  carbamoyl-phosphate synthase L chain ATP-binding  48.56 
 
 
696 aa  630  1e-179  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1359  3-methylcrotonyl-CoA carboxylase alpha subunit  51.54 
 
 
673 aa  627  1e-178  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.812437 
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  50.59 
 
 
676 aa  626  1e-178  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1455  carbamoyl-phosphate synthase L chain, ATP-binding  48.56 
 
 
691 aa  622  1e-177  Shewanella sediminis HAW-EB3  Bacteria  normal  0.419117  normal 
 
 
-
 
NC_007954  Sden_2248  carbamoyl-phosphate synthase L chain, ATP-binding  49.36 
 
 
697 aa  623  1e-177  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1809  carbamoyl-phosphate synthase L chain ATP-binding  52.15 
 
 
650 aa  622  1e-177  Pseudomonas putida W619  Bacteria  normal  normal  0.202229 
 
 
-
 
NC_004347  SO_1894  acetyl-CoA carboxylase, biotin carboxylase, putative  49.71 
 
 
694 aa  621  1e-176  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_3277  alpha subunit of geranoyl-CoA carboxylase, GnyA  53.52 
 
 
655 aa  619  1e-176  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_38480  alpha subunit of geranoyl-CoA carboxylase, GnyA  53.52 
 
 
655 aa  620  1e-176  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4067  acetyl-CoA carboxylase, biotin carboxylase, putative  51.72 
 
 
650 aa  617  1e-175  Pseudomonas putida KT2440  Bacteria  normal  0.544109  unclonable  0.000000957509 
 
 
-
 
NC_010322  PputGB1_3665  carbamoyl-phosphate synthase L chain ATP-binding  51.5 
 
 
650 aa  618  1e-175  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000243321  hitchhiker  0.000000000183935 
 
 
-
 
NC_010506  Swoo_3226  carbamoyl-phosphate synthase L chain ATP-binding  47.23 
 
 
709 aa  615  1e-175  Shewanella woodyi ATCC 51908  Bacteria  normal  0.835408  normal  0.018356 
 
 
-
 
NC_012560  Avin_49520  acetyl-CoA carboxylase, biotin carboxylase  53.19 
 
 
658 aa  612  9.999999999999999e-175  Azotobacter vinelandii DJ  Bacteria  normal  0.296412  n/a   
 
 
-
 
NC_007492  Pfl01_3659  3-methylcrotonoyl-CoA carboxylase, alpha subunit  51.33 
 
 
649 aa  613  9.999999999999999e-175  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00262153  normal  0.0752572 
 
 
-
 
NC_009512  Pput_1774  carbamoyl-phosphate synthase L chain, ATP-binding  51.56 
 
 
650 aa  615  9.999999999999999e-175  Pseudomonas putida F1  Bacteria  hitchhiker  0.00809985  hitchhiker  0.00202818 
 
 
-
 
NC_007925  RPC_2781  carbamoyl-phosphate synthase L chain, ATP-binding  50.9 
 
 
667 aa  608  1e-173  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0940378  normal  0.476201 
 
 
-
 
NC_004310  BR0018  biotin carboxylase  52.54 
 
 
673 aa  607  9.999999999999999e-173  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  52.54 
 
 
673 aa  608  9.999999999999999e-173  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0039  carbamoyl-phosphate synthase L chain ATP-binding  52.77 
 
 
655 aa  604  1.0000000000000001e-171  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.540073  n/a   
 
 
-
 
NC_008044  TM1040_0738  3-methylcrotonoyl-CoA carboxylase, alpha subunit  53.62 
 
 
645 aa  602  1.0000000000000001e-171  Ruegeria sp. TM1040  Bacteria  normal  0.623779  normal 
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  46.8 
 
 
686 aa  599  1e-170  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4535  carbamoyl-phosphate synthase L chain ATP-binding  52.88 
 
 
662 aa  601  1e-170  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2316  carbamoyl-phosphate synthase L chain ATP-binding  53.37 
 
 
662 aa  593  1e-168  Methylobacterium sp. 4-46  Bacteria  normal  0.0459588  normal  0.101585 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  50.15 
 
 
670 aa  592  1e-168  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_009484  Acry_1514  carbamoyl-phosphate synthase L chain, ATP-binding  54.53 
 
 
662 aa  591  1e-167  Acidiphilium cryptum JF-5  Bacteria  normal  0.0937077  n/a   
 
 
-
 
NC_011004  Rpal_2809  Carbamoyl-phosphate synthase L chain ATP-binding  50.74 
 
 
670 aa  591  1e-167  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.978814  n/a   
 
 
-
 
NC_007778  RPB_2933  carbamoyl-phosphate synthase L chain, ATP-binding  50.88 
 
 
671 aa  587  1e-166  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  49.03 
 
 
666 aa  583  1.0000000000000001e-165  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  44.97 
 
 
654 aa  579  1e-164  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  44.59 
 
 
654 aa  578  1e-164  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007406  Nwi_1604  carbamoyl-phosphate synthetase large chain  47.69 
 
 
668 aa  577  1.0000000000000001e-163  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0456964  normal  0.316567 
 
 
-
 
NC_007958  RPD_0350  carbamoyl-phosphate synthase L chain, ATP-binding  49.11 
 
 
679 aa  573  1.0000000000000001e-162  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.000448558 
 
 
-
 
NC_007958  RPD_2535  carbamoyl-phosphate synthase L chain, ATP-binding  49.26 
 
 
671 aa  575  1.0000000000000001e-162  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  47.27 
 
 
652 aa  567  1e-160  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_007493  RSP_2509  3-methylcrotonoyl-CoA carboxylase, alpha subunit  51.69 
 
 
646 aa  567  1e-160  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.509464  n/a   
 
 
-
 
NC_008347  Mmar10_1727  carbamoyl-phosphate synthase L chain, ATP-binding  50.95 
 
 
667 aa  565  1e-160  Maricaulis maris MCS10  Bacteria  normal  0.807685  normal  0.290764 
 
 
-
 
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