More than 300 homologs were found in PanDaTox collection
for query gene Dshi_0723 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  60.06 
 
 
684 aa  769    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  79.59 
 
 
685 aa  1106    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  70.93 
 
 
667 aa  970    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  56.5 
 
 
675 aa  730    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  60.29 
 
 
660 aa  772    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  71.37 
 
 
667 aa  975    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  57.37 
 
 
682 aa  746    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  57.39 
 
 
678 aa  752    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  57.98 
 
 
662 aa  754    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  57 
 
 
682 aa  743    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  63.03 
 
 
673 aa  834    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  68.58 
 
 
670 aa  941    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  56.85 
 
 
667 aa  748    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  58.39 
 
 
667 aa  738    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  58.18 
 
 
671 aa  760    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  79.18 
 
 
695 aa  1076    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  55.35 
 
 
696 aa  715    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  71.18 
 
 
666 aa  968    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  79.18 
 
 
666 aa  1078    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  59.94 
 
 
675 aa  791    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  59.53 
 
 
673 aa  780    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  57.84 
 
 
682 aa  743    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  78.85 
 
 
666 aa  1069    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  57.94 
 
 
662 aa  769    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  64.96 
 
 
671 aa  876    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  55.54 
 
 
691 aa  720    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  57.29 
 
 
669 aa  750    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  58.76 
 
 
671 aa  757    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  59.77 
 
 
671 aa  770    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  57.29 
 
 
669 aa  749    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  60.79 
 
 
667 aa  786    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  60.44 
 
 
673 aa  783    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  53.95 
 
 
669 aa  688    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  58.39 
 
 
668 aa  724    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  81.2 
 
 
680 aa  1116    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  53.31 
 
 
684 aa  694    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  60.06 
 
 
671 aa  774    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  70.63 
 
 
667 aa  964    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  70.04 
 
 
667 aa  949    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  58.98 
 
 
671 aa  768    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  54.62 
 
 
682 aa  701    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  58.68 
 
 
652 aa  785    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  56.77 
 
 
678 aa  737    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  59.04 
 
 
691 aa  753    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  59.28 
 
 
671 aa  756    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  60.06 
 
 
667 aa  768    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  58.21 
 
 
668 aa  743    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
681 aa  1401    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  81.5 
 
 
676 aa  1120    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  60.58 
 
 
668 aa  781    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  54.1 
 
 
682 aa  701    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  62.43 
 
 
670 aa  827    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  55.41 
 
 
682 aa  730    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  57.51 
 
 
682 aa  747    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  62.92 
 
 
669 aa  840    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  60.41 
 
 
671 aa  786    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  47.95 
 
 
655 aa  626  1e-178  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  46.12 
 
 
656 aa  611  1e-173  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.68 
 
 
691 aa  577  1.0000000000000001e-163  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.88 
 
 
668 aa  518  1e-146  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011694  PHATRDRAFT_51245  carboxylase propionyl-coa carboxylase  42.94 
 
 
664 aa  516  1.0000000000000001e-145  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  44.99 
 
 
673 aa  510  1e-143  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  42.11 
 
 
681 aa  508  9.999999999999999e-143  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  42.77 
 
 
652 aa  508  9.999999999999999e-143  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  41.05 
 
 
689 aa  508  9.999999999999999e-143  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  53.66 
 
 
450 aa  508  9.999999999999999e-143  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  44.46 
 
 
666 aa  503  1e-141  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  42.75 
 
 
654 aa  502  1e-141  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  51.4 
 
 
498 aa  500  1e-140  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  41.33 
 
 
686 aa  499  1e-140  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  44.65 
 
 
667 aa  498  1e-139  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.16 
 
 
666 aa  498  1e-139  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  44.89 
 
 
674 aa  496  1e-139  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  45.21 
 
 
675 aa  498  1e-139  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  41.75 
 
 
665 aa  496  1e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  53.76 
 
 
450 aa  493  9.999999999999999e-139  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  45.22 
 
 
674 aa  495  9.999999999999999e-139  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  43.44 
 
 
649 aa  491  1e-137  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.7 
 
 
674 aa  491  1e-137  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2573  carbamoyl-phosphate synthase L chain, ATP-binding  40.88 
 
 
677 aa  489  1e-137  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  41.42 
 
 
653 aa  490  1e-137  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  42.98 
 
 
666 aa  491  1e-137  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  45 
 
 
712 aa  488  1e-136  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  42.94 
 
 
649 aa  487  1e-136  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  52.7 
 
 
480 aa  486  1e-136  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  40.78 
 
 
666 aa  487  1e-136  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  42.02 
 
 
662 aa  484  1e-135  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  39.23 
 
 
654 aa  484  1e-135  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  39.09 
 
 
654 aa  484  1e-135  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  43.45 
 
 
672 aa  483  1e-135  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_007798  NSE_0815  propionyl-CoA carboxylase, alpha subunit  40.58 
 
 
652 aa  483  1e-135  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.904428  n/a   
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  50.85 
 
 
448 aa  484  1e-135  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_007954  Sden_2248  carbamoyl-phosphate synthase L chain, ATP-binding  40.14 
 
 
697 aa  484  1e-135  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1803  acetyl-CoA carboxylase biotin carboxylase subunit  52.16 
 
 
445 aa  483  1e-135  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.220445  n/a   
 
 
-
 
NC_003909  BCE_2549  acetyl-CoA carboxylase biotin carboxylase subunit  51.72 
 
 
445 aa  480  1e-134  Bacillus cereus ATCC 10987  Bacteria  normal  0.569347  n/a   
 
 
-
 
NC_007347  Reut_A1463  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.17 
 
 
674 aa  480  1e-134  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  50.86 
 
 
493 aa  479  1e-134  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  42.84 
 
 
670 aa  481  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  40.54 
 
 
676 aa  479  1e-134  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2604  acetyl-CoA carboxylase biotin carboxylase subunit  51.72 
 
 
445 aa  480  1e-134  Bacillus cereus AH187  Bacteria  normal  0.189257  n/a   
 
 
-
 
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