More than 300 homologs were found in PanDaTox collection
for query gene Rfer_2802 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  56.02 
 
 
667 aa  688    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  55.64 
 
 
667 aa  710    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  56.22 
 
 
685 aa  738    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  56.17 
 
 
684 aa  677    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  77.75 
 
 
682 aa  1075    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  53.31 
 
 
681 aa  685    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  66.81 
 
 
667 aa  880    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  55.49 
 
 
666 aa  710    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  51.73 
 
 
671 aa  658    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  56.94 
 
 
669 aa  710    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  54.61 
 
 
695 aa  699    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  66.96 
 
 
662 aa  890    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  55.2 
 
 
667 aa  703    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  53.06 
 
 
669 aa  661    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  56.73 
 
 
667 aa  673    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  73.79 
 
 
696 aa  1024    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  56.87 
 
 
662 aa  737    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  54.24 
 
 
670 aa  687    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  54.07 
 
 
671 aa  687    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  54.59 
 
 
671 aa  681    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  51.47 
 
 
652 aa  642    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  54.82 
 
 
673 aa  660    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  74.01 
 
 
675 aa  1025    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  76.87 
 
 
682 aa  1063    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  66.33 
 
 
678 aa  869    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  53.81 
 
 
680 aa  694    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
684 aa  1406    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  79.94 
 
 
682 aa  1097    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  54.93 
 
 
675 aa  691    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  54.17 
 
 
667 aa  677    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  55.34 
 
 
667 aa  702    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  54.85 
 
 
671 aa  687    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  83.19 
 
 
682 aa  1169    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  54.76 
 
 
666 aa  700    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  55.77 
 
 
673 aa  696    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  52.48 
 
 
669 aa  656    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  77.89 
 
 
682 aa  1077    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  56.69 
 
 
673 aa  704    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  56.17 
 
 
667 aa  678    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  53.97 
 
 
691 aa  670    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  53.61 
 
 
671 aa  676    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  54.19 
 
 
671 aa  675    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  55.99 
 
 
671 aa  711    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  54.4 
 
 
666 aa  689    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  54.72 
 
 
676 aa  702    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  53.57 
 
 
668 aa  662    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  83.89 
 
 
682 aa  1170    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  56.64 
 
 
671 aa  695    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  54.52 
 
 
670 aa  686    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  73.59 
 
 
691 aa  1017    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  52.83 
 
 
668 aa  645    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  75.4 
 
 
682 aa  1047    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  54.08 
 
 
660 aa  657    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  66.42 
 
 
678 aa  875    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  52.78 
 
 
668 aa  633  1e-180  Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  50.29 
 
 
669 aa  622  1e-177  Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  44.11 
 
 
656 aa  547  1e-154  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  44.35 
 
 
655 aa  536  1e-151  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  42.55 
 
 
665 aa  516  1.0000000000000001e-145  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  42.04 
 
 
691 aa  515  1e-144  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46.35 
 
 
667 aa  503  1e-141  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  53.3 
 
 
498 aa  487  1e-136  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  57.05 
 
 
666 aa  484  1e-135  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  45.57 
 
 
674 aa  484  1e-135  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  45.2 
 
 
674 aa  479  1e-134  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  44.69 
 
 
660 aa  480  1e-134  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_008553  Mthe_0794  pyruvate carboxylase subunit A  52.32 
 
 
499 aa  481  1e-134  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  53.08 
 
 
450 aa  481  1e-134  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  43.4 
 
 
662 aa  479  1e-134  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  51.88 
 
 
448 aa  481  1e-134  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  44.24 
 
 
675 aa  476  1e-133  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  53.08 
 
 
493 aa  476  1e-133  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  43.44 
 
 
700 aa  476  1e-133  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  53.33 
 
 
681 aa  475  1e-132  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  52.98 
 
 
480 aa  475  1e-132  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.25 
 
 
674 aa  475  1e-132  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  51.22 
 
 
446 aa  474  1e-132  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  43.59 
 
 
668 aa  472  1e-132  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4090  carbamoyl-phosphate synthase L chain, ATP-binding  42.88 
 
 
660 aa  473  1e-132  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.734303  normal 
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  52.97 
 
 
450 aa  475  1e-132  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  51.22 
 
 
446 aa  471  1.0000000000000001e-131  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  40.53 
 
 
654 aa  470  1.0000000000000001e-131  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  51.66 
 
 
446 aa  471  1.0000000000000001e-131  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_008783  BARBAKC583_0761  acetyl-CoA carboxylase biotin carboxylase subunit  51.54 
 
 
446 aa  470  1.0000000000000001e-131  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1142  biotin carboxylase  51.66 
 
 
450 aa  469  1.0000000000000001e-131  Clostridium perfringens SM101  Bacteria  normal  0.123284  n/a   
 
 
-
 
NC_009667  Oant_2274  acetyl-CoA carboxylase biotin carboxylase subunit  50.43 
 
 
459 aa  468  9.999999999999999e-131  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.41756  n/a   
 
 
-
 
NC_013216  Dtox_2602  acetyl-CoA carboxylase, biotin carboxylase  51.99 
 
 
447 aa  466  9.999999999999999e-131  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.000536628  normal 
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  43.23 
 
 
662 aa  468  9.999999999999999e-131  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_007204  Psyc_0311  3-methylcrotonoyl-CoA carboxylase, alpha subunit  41.58 
 
 
706 aa  467  9.999999999999999e-131  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  51 
 
 
446 aa  467  9.999999999999999e-131  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_008705  Mkms_3703  carbamoyl-phosphate synthase L chain, ATP-binding  41.88 
 
 
662 aa  468  9.999999999999999e-131  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3630  carbamoyl-phosphate synthase L chain, ATP-binding protein  41.88 
 
 
662 aa  468  9.999999999999999e-131  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1330  biotin carboxylase  51.21 
 
 
450 aa  467  9.999999999999999e-131  Clostridium perfringens ATCC 13124  Bacteria  normal  0.110038  n/a   
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  40.92 
 
 
676 aa  466  9.999999999999999e-131  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  54.84 
 
 
712 aa  464  1e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0029  acetyl-CoA carboxylase, biotin carboxylase  51.21 
 
 
450 aa  463  1e-129  Capnocytophaga ochracea DSM 7271  Bacteria  decreased coverage  0.00270537  n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  40.56 
 
 
654 aa  465  1e-129  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_12523  acetyl-/propionyl-coenzyme A carboxylase subunit alpha  41.35 
 
 
654 aa  464  1e-129  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.881887 
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  55.27 
 
 
679 aa  465  1e-129  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  51.32 
 
 
689 aa  462  1e-129  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
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