| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2889 |
|---|
| Symbol | |
|---|
| ID | 5199886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3174135 |
|---|
| End bp | 3176117 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640582439 |
|---|
| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
|---|
| Protein accession | YP_001263379 |
|---|
| Protein GI | 148555797 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.894613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.421393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA AAATCCTGAT CGCCAATCGC GGCGAGATCG CCTGTCGCGT GATCAAGACC
GCCCGCCGGA TGGGCATCAA GACCGTTGCC GTCTATTCGG ACGCCGACGC GCGCGCGCCG
CATGTCGAGA TGGCCGACGA GGCCGTCCAT ATCGGCGCCT CGCCCGCGTC GGAGAGCTAT
CTGATCGCCG ACCGGATCAT CCAGGCGTGC AAGGACACCG GCGCCGAGGC GGTCCACCCC
GGTTACGGCT TCCTGTCGGA GCGGACCAGC TTCGCCGAGG CGCTGGCCGC CGCCAACATC
GCCTTCATCG GCCCGCCGGC CAATGCGATC GCCGCGATGG GCGACAAGAT CGAATCGAAG
AAGCTGGCGA TGGAGGCCGG CGTCAACGTC GTCCCCGGCT ATGTCGGCGA GATCGACGAC
ACCGACCATG CCGTCCGCAT CGCCAACGAC ATCGGCTATC CGGTGATGAT GAAGGCGTCG
GCCGGCGGCG GCGGCAAGGG CATGCGCCTC GCCTATTCGG AGAAGGACGT CCGCGAGAAT
TTCGACAGCG TCAAGCGCGA GGGGCTGAAC AGCTTCGGCG ACGACCGCGT CTTCATCGAG
AAGTTCATCG AGAGCCCGCG CCACATCGAG ATCCAGGTGC TCGGCGACAA GCATGGCAAC
ATCGTCTACC TCAACGAGCG CGAATGCTCG ATCCAGCGCC GCCACCAGAA GGTGGTCGAG
GAGGCGCCGT CGCCCTTCGT CAGCCCGGAG ATGCGCAAGG CGATGGGCGA GCAGTGCGTC
GCGCTCGCCC GCGCGGTCGG CTATTTCAGC GCCGGCACCG TCGAGCTGAT CGTCTCGGGC
GCCGACAAGA CCGGCCAGGG CTTCTACTTC CTCGAGATGA ACACCCGGCT CCAGGTCGAG
CATCCCGTCA CCGAATGCAT CACCGGGCTC GACCTGGTCG AGCAGATGAT CCGCGTCGCC
TATGGCGAGA AGCTGGCCTT CACCCAGGCC GACGTGAAGA TCAACGGCTG GGCGGTCGAG
AACCGCGTCT ATGCCGAGGA CCCCTATCGC GGCTTCCTGC CGTCGACCGG CCGCCTCGTC
CGCTACCGGC CGCCGGCCGA GGTCGACAAT GTCCGCGTCG ACGACGGCGT CTATGAGGGC
TCCGAGATCT CGATGTTCTA CGACCCGATG ATCGCCAAGC TGATCACCTG GGGCGAGACC
CGCGAGGCGG CGATCGACCG GCAGATCACC GCGCTCGACC GGTTCGAGAT CGACGGCATC
GGCCATAATG TCGATTTCCT GTCGGCGCTG ATGCAGCATC CGCGCTTCCG CTCGGGCAAC
ATCACCACCG GCTTCATCGC CGAGGAATTC CCCGAAGGCT TCACCGGCGC CGCCGCCGAT
GCGAAGCTGG GCCTGCACCT CGCCGCGGTG GCGGGCGTGC TGGCCAGCAT CGACACCGCC
CGCGCGGCGC AGATCGACGG CCGGCTCAAC GGCCCTGCCG ATCCCTCGAC GAGCTGGGTC
GTCACCCTCG ACAAGGTCGA GCGCCAGATC GAGATCCTCG GCGACGCGGT CAGCGTCGAC
GGCACCCCGG TGGTGGTCGA CGCCCCCTAT GTGCCGGGGC AGAAGCTGGT CGAGGCGGTG
ATCGACGGCG AGCCGCTGTC GATCCGGGTC GAGCGCAAGC GCACCGGCTG GCGCTTCACG
ACGCGGGGCG CGAGCCACGA GCTGCGCGTG CTGACCCCGC GCGTCGCGTC GCTGGCGCAC
CACATGATCG AGAAGATCCC GCCCGACATG TCGCGCTTCC TGCTCTGCCC GATGCCGGGC
CTGGTGACCG CGATCCACGT CGCCGAGGGC GCAAAGGTCG AGGCCGGCCA GCCGCTCGCG
GTGGTCGAGG CGATGAAGAT GGAGAACATC CTGCGCGCCG AGAAGGCCGG CACGGTCAAG
GCCGTCGCCG CCAAGGCCGG CGACAGCCTT GCCGTCGACG CGGTGATCCT CGAATTCGAG
TGA
|
|---|
| Protein sequence | MFKKILIANR GEIACRVIKT ARRMGIKTVA VYSDADARAP HVEMADEAVH IGASPASESY
LIADRIIQAC KDTGAEAVHP GYGFLSERTS FAEALAAANI AFIGPPANAI AAMGDKIESK
KLAMEAGVNV VPGYVGEIDD TDHAVRIAND IGYPVMMKAS AGGGGKGMRL AYSEKDVREN
FDSVKREGLN SFGDDRVFIE KFIESPRHIE IQVLGDKHGN IVYLNERECS IQRRHQKVVE
EAPSPFVSPE MRKAMGEQCV ALARAVGYFS AGTVELIVSG ADKTGQGFYF LEMNTRLQVE
HPVTECITGL DLVEQMIRVA YGEKLAFTQA DVKINGWAVE NRVYAEDPYR GFLPSTGRLV
RYRPPAEVDN VRVDDGVYEG SEISMFYDPM IAKLITWGET REAAIDRQIT ALDRFEIDGI
GHNVDFLSAL MQHPRFRSGN ITTGFIAEEF PEGFTGAAAD AKLGLHLAAV AGVLASIDTA
RAAQIDGRLN GPADPSTSWV VTLDKVERQI EILGDAVSVD GTPVVVDAPY VPGQKLVEAV
IDGEPLSIRV ERKRTGWRFT TRGASHELRV LTPRVASLAH HMIEKIPPDM SRFLLCPMPG
LVTAIHVAEG AKVEAGQPLA VVEAMKMENI LRAEKAGTVK AVAAKAGDSL AVDAVILEFE
|
|---|
| |