More than 300 homologs were found in PanDaTox collection
for query gene Swit_2889 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  55.75 
 
 
682 aa  690    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  55.6 
 
 
675 aa  677    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  54.66 
 
 
696 aa  668    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  62.05 
 
 
667 aa  813    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  62.35 
 
 
667 aa  818    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  58.16 
 
 
682 aa  724    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  62.17 
 
 
671 aa  789    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  60.21 
 
 
673 aa  744    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  59.79 
 
 
669 aa  751    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  58.82 
 
 
678 aa  740    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  59.1 
 
 
667 aa  732    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  62.69 
 
 
666 aa  812    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  60.09 
 
 
671 aa  735    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  59.79 
 
 
671 aa  754    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  59.35 
 
 
671 aa  742    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  63.32 
 
 
666 aa  823    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  63.58 
 
 
695 aa  819    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  59.32 
 
 
673 aa  738    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  59.7 
 
 
684 aa  720    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  57.73 
 
 
682 aa  711    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  58.05 
 
 
662 aa  726    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  63.43 
 
 
666 aa  819    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  61.7 
 
 
667 aa  787    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  59.5 
 
 
671 aa  740    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  58.11 
 
 
678 aa  732    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  74.29 
 
 
673 aa  1007    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  60.87 
 
 
685 aa  807    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  59.85 
 
 
667 aa  723    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  58.07 
 
 
669 aa  738    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  59.56 
 
 
680 aa  776    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  54.08 
 
 
684 aa  664    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  59.53 
 
 
667 aa  714    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  60.21 
 
 
668 aa  734    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  59.79 
 
 
671 aa  748    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  55.25 
 
 
682 aa  677    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
660 aa  1345    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  61.4 
 
 
670 aa  777    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  55.83 
 
 
682 aa  701    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  56.5 
 
 
682 aa  715    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  59.82 
 
 
691 aa  733    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  59.5 
 
 
671 aa  736    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  60.29 
 
 
681 aa  774    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  55.76 
 
 
691 aa  695    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  60.29 
 
 
676 aa  795    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  75 
 
 
668 aa  1008    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  61.21 
 
 
675 aa  770    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  60.09 
 
 
667 aa  737    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  62.44 
 
 
667 aa  814    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  57.33 
 
 
669 aa  730    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  58.1 
 
 
670 aa  737    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  55.83 
 
 
682 aa  701    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  60.45 
 
 
662 aa  765    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  57.89 
 
 
652 aa  718    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  58.18 
 
 
668 aa  678    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  55.34 
 
 
669 aa  684    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  59.94 
 
 
671 aa  733    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  46.55 
 
 
656 aa  585  1e-166  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  46.58 
 
 
655 aa  583  1.0000000000000001e-165  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  45.21 
 
 
691 aa  566  1e-160  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  49.71 
 
 
666 aa  543  1e-153  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  50.37 
 
 
667 aa  541  9.999999999999999e-153  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  44.43 
 
 
681 aa  523  1e-147  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  47.83 
 
 
673 aa  509  1e-143  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  48.45 
 
 
660 aa  509  1e-143  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  46.11 
 
 
652 aa  509  1e-143  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_009439  Pmen_2030  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.2 
 
 
644 aa  509  1e-143  Pseudomonas mendocina ymp  Bacteria  normal  0.0317693  normal  0.435789 
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  46.38 
 
 
673 aa  509  1e-143  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_004310  BR0018  biotin carboxylase  47.68 
 
 
673 aa  506  9.999999999999999e-143  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  43.95 
 
 
653 aa  507  9.999999999999999e-143  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.09 
 
 
668 aa  506  9.999999999999999e-143  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.49 
 
 
663 aa  508  9.999999999999999e-143  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  53.8 
 
 
498 aa  506  9.999999999999999e-143  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  46.22 
 
 
670 aa  504  1e-141  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  45.36 
 
 
654 aa  503  1e-141  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  43.82 
 
 
661 aa  504  1e-141  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  46.36 
 
 
643 aa  502  1e-141  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  45.62 
 
 
662 aa  502  1e-141  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2809  Carbamoyl-phosphate synthase L chain ATP-binding  44.1 
 
 
670 aa  503  1e-141  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.978814  n/a   
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  45.41 
 
 
649 aa  502  1e-140  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  44.81 
 
 
666 aa  499  1e-140  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  44.66 
 
 
665 aa  499  1e-140  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  43.22 
 
 
666 aa  501  1e-140  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2573  carbamoyl-phosphate synthase L chain, ATP-binding  42.69 
 
 
677 aa  499  1e-140  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  47.2 
 
 
675 aa  496  1e-139  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  42.13 
 
 
654 aa  496  1e-139  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008752  Aave_4351  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.21 
 
 
677 aa  498  1e-139  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  46.68 
 
 
670 aa  496  1e-139  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1793  hypothetical protein  42.13 
 
 
654 aa  494  9.999999999999999e-139  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  43.82 
 
 
649 aa  493  9.999999999999999e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_007492  Pfl01_3659  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.98 
 
 
649 aa  493  9.999999999999999e-139  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00262153  normal  0.0752572 
 
 
-
 
NC_009620  Smed_4535  carbamoyl-phosphate synthase L chain ATP-binding  45.96 
 
 
662 aa  493  9.999999999999999e-139  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1669  3-methylcrotonoyl-CoA carboxylase, alpha subunit  42.84 
 
 
674 aa  492  9.999999999999999e-139  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3759  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.52 
 
 
672 aa  493  9.999999999999999e-139  Acidovorax sp. JS42  Bacteria  normal  normal  0.746239 
 
 
-
 
NC_007958  RPD_0350  carbamoyl-phosphate synthase L chain, ATP-binding  45.08 
 
 
679 aa  494  9.999999999999999e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.000448558 
 
 
-
 
NC_011992  Dtpsy_3040  Carbamoyl-phosphate synthase L chain ATP-binding  47.67 
 
 
672 aa  494  9.999999999999999e-139  Acidovorax ebreus TPSY  Bacteria  normal  0.233889  n/a   
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  45.88 
 
 
712 aa  489  1e-137  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  45.8 
 
 
666 aa  491  1e-137  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_010322  PputGB1_3665  carbamoyl-phosphate synthase L chain ATP-binding  45.39 
 
 
650 aa  490  1e-137  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000243321  hitchhiker  0.000000000183935 
 
 
-
 
NC_007925  RPC_2781  carbamoyl-phosphate synthase L chain, ATP-binding  43.88 
 
 
667 aa  492  1e-137  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0940378  normal  0.476201 
 
 
-
 
NC_010501  PputW619_1809  carbamoyl-phosphate synthase L chain ATP-binding  45.24 
 
 
650 aa  489  1e-137  Pseudomonas putida W619  Bacteria  normal  normal  0.202229 
 
 
-
 
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