More than 300 homologs were found in PanDaTox collection
for query gene Msil_3786 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  53.24 
 
 
652 aa  662    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  69.2 
 
 
671 aa  905    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  62.09 
 
 
671 aa  805    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  60.87 
 
 
667 aa  770    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  57.66 
 
 
685 aa  750    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  54.76 
 
 
682 aa  683    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  54.14 
 
 
696 aa  676    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  68.63 
 
 
675 aa  910    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  60.87 
 
 
667 aa  761    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  67.11 
 
 
671 aa  892    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  73.77 
 
 
671 aa  961    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  72.56 
 
 
667 aa  959    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  54.38 
 
 
667 aa  680    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  54.07 
 
 
682 aa  674    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  72.56 
 
 
667 aa  951    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  66.22 
 
 
671 aa  863    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  53.62 
 
 
675 aa  665    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  55.34 
 
 
682 aa  687    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  59.52 
 
 
695 aa  762    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  53.91 
 
 
682 aa  685    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  57.72 
 
 
669 aa  747    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  58.31 
 
 
669 aa  753    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  54.9 
 
 
682 aa  683    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  57.1 
 
 
662 aa  714    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  60.87 
 
 
667 aa  774    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  67.86 
 
 
671 aa  896    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  56.99 
 
 
669 aa  695    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  56.7 
 
 
673 aa  701    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  53.46 
 
 
678 aa  681    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
668 aa  1343    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  59.27 
 
 
680 aa  754    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  52.99 
 
 
684 aa  664    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  52.81 
 
 
691 aa  672    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  60.12 
 
 
670 aa  764    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  68.15 
 
 
671 aa  900    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  54.31 
 
 
682 aa  684    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  60.42 
 
 
667 aa  765    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  58.18 
 
 
660 aa  704    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  67.66 
 
 
668 aa  880    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  59.38 
 
 
666 aa  763    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  72.71 
 
 
684 aa  952    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  72.81 
 
 
673 aa  961    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  67.41 
 
 
691 aa  880    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  68.15 
 
 
671 aa  874    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  64.14 
 
 
673 aa  847    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  65.23 
 
 
669 aa  855    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  72.26 
 
 
667 aa  941    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  57.35 
 
 
676 aa  760    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  56.7 
 
 
668 aa  699    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  61.3 
 
 
666 aa  785    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  56.14 
 
 
662 aa  701    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  63.89 
 
 
670 aa  829    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  53.82 
 
 
678 aa  682    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  58.39 
 
 
681 aa  748    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  59.31 
 
 
666 aa  756    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  55.01 
 
 
682 aa  677    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  44.72 
 
 
655 aa  570  1e-161  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  43.55 
 
 
656 aa  567  1e-160  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.27 
 
 
691 aa  546  1e-154  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  44.33 
 
 
654 aa  504  1e-141  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.66 
 
 
668 aa  498  1e-139  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  44.71 
 
 
665 aa  497  1e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  46.99 
 
 
662 aa  494  9.999999999999999e-139  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_008726  Mvan_4090  carbamoyl-phosphate synthase L chain, ATP-binding  44.94 
 
 
660 aa  491  1e-137  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.734303  normal 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  41.31 
 
 
681 aa  489  1e-137  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46.37 
 
 
667 aa  489  1e-137  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  44.9 
 
 
643 aa  492  1e-137  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  43.88 
 
 
662 aa  490  1e-137  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.81 
 
 
666 aa  483  1e-135  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  44.26 
 
 
653 aa  485  1e-135  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  44.96 
 
 
666 aa  482  1e-135  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_009656  PSPA7_2263  putative biotin carboxylase/biotin carboxyl carrier protein  44.07 
 
 
661 aa  479  1e-134  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_26670  putative biotin carboxylase/biotin carboxyl carrier protein  44.28 
 
 
661 aa  479  1e-134  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.795664  normal 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  45.19 
 
 
670 aa  479  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  52.69 
 
 
446 aa  477  1e-133  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  42.35 
 
 
652 aa  476  1e-133  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_013730  Slin_3536  Carbamoyl-phosphate synthase L chain ATP- binding protein  51.04 
 
 
517 aa  478  1e-133  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  52.91 
 
 
450 aa  476  1e-133  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1404  Carbamoyl-phosphate synthase L chain ATP-binding  43.98 
 
 
733 aa  474  1e-132  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000354677 
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  43.19 
 
 
661 aa  472  1e-132  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  45.57 
 
 
660 aa  475  1e-132  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  53.78 
 
 
480 aa  471  1.0000000000000001e-131  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  45.33 
 
 
666 aa  471  1.0000000000000001e-131  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  43.9 
 
 
674 aa  469  1.0000000000000001e-131  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2553  carbamoyl-phosphate synthase L chain, ATP-binding  45.88 
 
 
660 aa  471  1.0000000000000001e-131  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.503906 
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  52.47 
 
 
446 aa  469  1.0000000000000001e-131  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_012791  Vapar_0326  Carbamoyl-phosphate synthase L chain ATP-binding  44.66 
 
 
649 aa  470  1.0000000000000001e-131  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  45.31 
 
 
675 aa  471  1.0000000000000001e-131  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.26 
 
 
672 aa  468  9.999999999999999e-131  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  40.06 
 
 
661 aa  468  9.999999999999999e-131  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  51.57 
 
 
446 aa  466  9.999999999999999e-131  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  52.02 
 
 
446 aa  466  9.999999999999999e-131  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  40.06 
 
 
661 aa  468  9.999999999999999e-131  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1727  carbamoyl-phosphate synthase L chain, ATP-binding  45.54 
 
 
667 aa  468  9.999999999999999e-131  Maricaulis maris MCS10  Bacteria  normal  0.807685  normal  0.290764 
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  50.64 
 
 
689 aa  468  9.999999999999999e-131  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1386  carbamoyl-phosphate synthase L chain, ATP-binding  40.55 
 
 
752 aa  462  1e-129  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  39.83 
 
 
654 aa  464  1e-129  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_1528  carbamoyl-phosphate synthase L chain, ATP-binding  56.08 
 
 
734 aa  464  1e-129  Frankia sp. CcI3  Bacteria  normal  0.890646  normal 
 
 
-
 
NC_007778  RPB_2933  carbamoyl-phosphate synthase L chain, ATP-binding  44.61 
 
 
671 aa  462  1e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0039  carbamoyl-phosphate synthase L chain ATP-binding  44.15 
 
 
655 aa  463  1e-129  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.540073  n/a   
 
 
-
 
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