| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3585 |
|---|
| Symbol | |
|---|
| ID | 6411260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3833527 |
|---|
| End bp | 3835542 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713464 |
|---|
| Product | Carbamoyl-phosphate synthase L chain ATP-binding |
|---|
| Protein accession | YP_001992560 |
|---|
| Protein GI | 192291955 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.930093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAC GAATTCTGAT CGCCAACCGC GGCGAGATCG CCTGCCGGGT CATCAAGACC
GCGCGTCGTA TGGGTATCGA GACGGTCGCC GTCTATTCCG AGGCGGATCG CGACGCGCTG
CACGTCGAAA TGGCCGATGA AGCGGTGCTG ATCGGCCCCC CGGCGGCGGC CGAGAGCTAT
CTGGTGATCG AGAAGATCGT CGAGGCCTGC AAGAAGACCG GCGCAGAGGC GGTACATCCG
GGCTACGGCT TCCTGTCCGA GCGTGAAGCG TTCCCGCGCG CGCTGGCCGA GGCCGGCATC
GTGTTCATCG GTCCGAACCC CGGCGCGATC GCCGCGATGG GCGACAAGAT CGAGTCGAAG
AAGGCCGCCG CGCAGGCCAA GGTTTCGACC GTGCCCGGCT TCCTCGGTGT GATCGAGGAC
GCCAAGCATG CGGTGAAGAT CGCCGACGAG ATCGGCTATC CGGTGATGAT CAAGGCCTCC
GCCGGCGGTG GCGGCAAGGG GATGCGCATC GCGCACTCCA CGGCGGAAGT GGCCGAGGGC
TTCAATCTCG CCAAGGCCGA GGCCAAGGCG TCGTTCGGCG ACGACCGCGT CTTCATCGAG
AAGTTCATCG TCGATCCGCG CCACATCGAA ATCCAGGTGC TCGGCGACAA GCACGGCAAC
GTCATCTATC TCGGTGAGCG TGAGTGCTCG ATCCAGCGCC GCAATCAGAA GGTGATCGAA
GAAGCGCCGT CGCCGCTGCT CGACGAAGTC ACCCGTCGCA AGATGGGCGA GCAGGCGGTC
GCGCTGGCCA AGGCCGTGAA CTACGACTCT GCCGGCACCG TCGAGTTCGT CGCCGGCCAG
GACAAGAGCT TCTACTTCCT CGAGATGAAC ACCCGCCTGC AGGTCGAACA TCCGGTCACC
GAAATGGTCA CCGGCATCGA TCTGGTCGAG CAGATGATCC GTGTGGCCGC CGGCGAGAAG
CTGGCGCTGG CGCAGAAGGA CGTCACGCTG AAGGGCTGGG CGATCGAGTC CCGCGTCTAT
GCGGAAGATC CGTTCCGCAA CTTCCTGCCG TCGATCGGCC GCCTGGTGAA GTACCGCCCG
CCGGCCGAGA GCGCGGCGTC CGGCATCACC GTGCGCAACG ACACCGGCGT GCAGGAGGGC
GGCGAGATCT CGATGTTCTA CGACCCGATG ATCGCCAAGC TGGTGACGCA CGGGCCGTCG
CGCGCCGCGG CGATCGAGGC GCAGACCCAC GCGCTCGATG CGTTCTACGT CGACGGCATC
CGCCACAACA TTCCGTTCCT GTCGGCGCTG ATGACGCATC CGCGCTGGCG CGAGGGCAAT
CTGTCGACCG GCTTCATCGC CGAGGAATTT CCGCAGGGCT TCCATCCGCG CGTGCCGGAG
GGCGAAGTTG CCCGCCGCAT CGCCGCGGTC GGCGCGGCGA TCGACCGCGT CATCGGCGAA
CGCAAGCGCA AGATCTCGGG CCAGATGATC GGCCGCGCGG TGATCCGCGA GCGCCGCCGC
TGCGTCTGGC TGGAGCGCAG CGAAGTGCCG CTCGACGTGA TCCGCGAGGG TGAGGCGTTC
GTCGTCCGCT TCGCCAATCC CGATGGCTCG CTCGGTCAGC CGCACCAGTT GCTGTCGTCC
TGGATGCCGG GCGATCCGGT GTGGGAAGGC ACCATCGACG GCCATCCGGT CGCGGTGCAG
GTTCGCGCGA TCCCGAACGG CTTCAAGCTG GCGCATCACG GCTACGAAGT CTCGGTCAAC
GTCTTCACCG AGCGCGAAGC TGCCTCGGCG CGCTGGATGA AGGAAGCCGA CAAGGCCGAC
ACCGGCAAGA AGGTGCTGTG CCCGATGCCG GGCCTGATCG TGTCGATCGC TGTGACCGAA
GGCCAGGAGG TCAAAGCCGG TGAGACGCTG GCGGTGGTCG AGGCGATGAA GATGCAGAAC
GTGCTGCGCG CCGAACGCGA CGGCACCGTC AAGAAGATCC ACGCCTCTGC CGGAGCGACG
CTCGCGGTCG ACGCGATGAT CCTCGAGTTC GCGTAA
|
|---|
| Protein sequence | MFKRILIANR GEIACRVIKT ARRMGIETVA VYSEADRDAL HVEMADEAVL IGPPAAAESY
LVIEKIVEAC KKTGAEAVHP GYGFLSEREA FPRALAEAGI VFIGPNPGAI AAMGDKIESK
KAAAQAKVST VPGFLGVIED AKHAVKIADE IGYPVMIKAS AGGGGKGMRI AHSTAEVAEG
FNLAKAEAKA SFGDDRVFIE KFIVDPRHIE IQVLGDKHGN VIYLGERECS IQRRNQKVIE
EAPSPLLDEV TRRKMGEQAV ALAKAVNYDS AGTVEFVAGQ DKSFYFLEMN TRLQVEHPVT
EMVTGIDLVE QMIRVAAGEK LALAQKDVTL KGWAIESRVY AEDPFRNFLP SIGRLVKYRP
PAESAASGIT VRNDTGVQEG GEISMFYDPM IAKLVTHGPS RAAAIEAQTH ALDAFYVDGI
RHNIPFLSAL MTHPRWREGN LSTGFIAEEF PQGFHPRVPE GEVARRIAAV GAAIDRVIGE
RKRKISGQMI GRAVIRERRR CVWLERSEVP LDVIREGEAF VVRFANPDGS LGQPHQLLSS
WMPGDPVWEG TIDGHPVAVQ VRAIPNGFKL AHHGYEVSVN VFTEREAASA RWMKEADKAD
TGKKVLCPMP GLIVSIAVTE GQEVKAGETL AVVEAMKMQN VLRAERDGTV KKIHASAGAT
LAVDAMILEF A
|
|---|
| |