More than 300 homologs were found in PanDaTox collection
for query gene Lcho_2693 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  52.66 
 
 
669 aa  660    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  54.93 
 
 
667 aa  709    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  68.6 
 
 
662 aa  920    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  55.44 
 
 
667 aa  711    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  72.46 
 
 
696 aa  1003    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  56.05 
 
 
667 aa  685    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  67.34 
 
 
678 aa  905    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
691 aa  1419    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  56.49 
 
 
673 aa  716    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  57.14 
 
 
669 aa  731    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  56.48 
 
 
667 aa  701    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  55.78 
 
 
666 aa  707    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  68.73 
 
 
667 aa  911    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  52.81 
 
 
668 aa  639    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  56.96 
 
 
685 aa  739    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  53.3 
 
 
671 aa  671    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  55.76 
 
 
660 aa  688    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  77.83 
 
 
682 aa  1086    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  55.49 
 
 
695 aa  704    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  54.45 
 
 
667 aa  695    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  55.01 
 
 
667 aa  704    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  77.13 
 
 
675 aa  1056    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  68.19 
 
 
678 aa  912    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  58.47 
 
 
662 aa  761    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  55.62 
 
 
675 aa  715    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  54.65 
 
 
671 aa  706    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  55.75 
 
 
673 aa  686    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  52.33 
 
 
652 aa  656    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  54.74 
 
 
671 aa  685    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  54.62 
 
 
668 aa  687    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  54.11 
 
 
680 aa  699    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  73.59 
 
 
684 aa  1016    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  56.38 
 
 
673 aa  712    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  55.12 
 
 
671 aa  704    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  75.4 
 
 
682 aa  1044    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  55.35 
 
 
666 aa  704    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  76.81 
 
 
682 aa  1060    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  55.54 
 
 
681 aa  711    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  75.22 
 
 
682 aa  1032    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  55.01 
 
 
666 aa  699    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  55.08 
 
 
691 aa  692    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  56.38 
 
 
671 aa  708    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  54.87 
 
 
671 aa  687    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  54.36 
 
 
671 aa  706    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  56.73 
 
 
676 aa  733    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  55.04 
 
 
668 aa  680    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  77.25 
 
 
682 aa  1074    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  54.77 
 
 
670 aa  702    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  53.96 
 
 
670 aa  686    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  76.59 
 
 
682 aa  1065    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  56.05 
 
 
684 aa  686    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  57.45 
 
 
671 aa  734    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  53.09 
 
 
669 aa  662    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  55.16 
 
 
667 aa  670    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  77.97 
 
 
682 aa  1088    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  49.06 
 
 
669 aa  605  9.999999999999999e-173  Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  44.94 
 
 
655 aa  550  1e-155  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  42.39 
 
 
656 aa  538  9.999999999999999e-153  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  42.86 
 
 
691 aa  529  1e-149  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  47.06 
 
 
667 aa  509  1e-143  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.92 
 
 
666 aa  508  9.999999999999999e-143  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  53.78 
 
 
498 aa  506  9.999999999999999e-143  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  53.26 
 
 
448 aa  497  1e-139  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  54.64 
 
 
450 aa  497  1e-139  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.83 
 
 
674 aa  493  9.999999999999999e-139  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  53.78 
 
 
493 aa  495  9.999999999999999e-139  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  43.27 
 
 
661 aa  493  9.999999999999999e-139  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_008553  Mthe_0794  pyruvate carboxylase subunit A  52.16 
 
 
499 aa  494  9.999999999999999e-139  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  53.04 
 
 
446 aa  491  1e-137  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  40.87 
 
 
681 aa  488  1e-136  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  43.02 
 
 
653 aa  485  1e-136  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_007517  Gmet_0984  biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha  52.39 
 
 
446 aa  486  1e-136  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000016105  normal  0.0128167 
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  52.83 
 
 
446 aa  488  1e-136  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  52.61 
 
 
446 aa  486  1e-136  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  53.46 
 
 
480 aa  485  1e-135  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  40.83 
 
 
689 aa  483  1e-135  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  53.02 
 
 
450 aa  481  1e-134  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  41.8 
 
 
676 aa  482  1e-134  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  43.75 
 
 
670 aa  476  1e-133  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0244  acetyl-CoA carboxylase biotin carboxylase subunit  54.45 
 
 
451 aa  479  1e-133  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  39.97 
 
 
661 aa  476  1e-133  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0311  3-methylcrotonoyl-CoA carboxylase, alpha subunit  41.51 
 
 
706 aa  476  1e-133  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  42.39 
 
 
668 aa  475  1e-133  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  43.89 
 
 
663 aa  477  1e-133  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_008261  CPF_1330  biotin carboxylase  50 
 
 
450 aa  477  1e-133  Clostridium perfringens ATCC 13124  Bacteria  normal  0.110038  n/a   
 
 
-
 
NC_008262  CPR_1142  biotin carboxylase  50.21 
 
 
450 aa  477  1e-133  Clostridium perfringens SM101  Bacteria  normal  0.123284  n/a   
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  44.09 
 
 
662 aa  474  1e-132  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  39.97 
 
 
654 aa  473  1e-132  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010086  Bmul_3469  carbamoyl-phosphate synthase L chain ATP-binding  45.14 
 
 
670 aa  473  1e-132  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2274  acetyl-CoA carboxylase biotin carboxylase subunit  51.17 
 
 
459 aa  475  1e-132  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.41756  n/a   
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  43.85 
 
 
660 aa  474  1e-132  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_013730  Slin_3536  Carbamoyl-phosphate synthase L chain ATP- binding protein  53.15 
 
 
517 aa  473  1e-132  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  42.53 
 
 
652 aa  475  1e-132  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  42.79 
 
 
662 aa  474  1e-132  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  40.29 
 
 
661 aa  475  1e-132  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1803  acetyl-CoA carboxylase biotin carboxylase subunit  51.84 
 
 
445 aa  473  1e-132  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.220445  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4036  acetyl-CoA carboxylase biotin carboxylase subunit  51.29 
 
 
450 aa  470  1.0000000000000001e-131  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.704131  n/a   
 
 
-
 
NC_011663  Sbal223_1527  Carbamoyl-phosphate synthase L chain ATP-binding  41.07 
 
 
685 aa  469  1.0000000000000001e-131  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0761  acetyl-CoA carboxylase biotin carboxylase subunit  50.75 
 
 
446 aa  469  1.0000000000000001e-131  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4314  acetyl-CoA carboxylase biotin carboxylase subunit  51.51 
 
 
450 aa  471  1.0000000000000001e-131  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
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