More than 300 homologs were found in PanDaTox collection
for query gene Pden_3684 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  71.2 
 
 
666 aa  962    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  58.68 
 
 
682 aa  772    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  58.95 
 
 
684 aa  737    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  60.87 
 
 
660 aa  796    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  57.23 
 
 
652 aa  764    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  71.57 
 
 
667 aa  976    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  59.57 
 
 
675 aa  786    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  58.61 
 
 
669 aa  765    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  57.39 
 
 
682 aa  754    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  58.53 
 
 
675 aa  755    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  83.09 
 
 
666 aa  1134    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  57.25 
 
 
667 aa  751    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  63.15 
 
 
673 aa  835    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  58.47 
 
 
669 aa  764    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  58.24 
 
 
671 aa  757    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  57.66 
 
 
668 aa  714    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  82.22 
 
 
695 aa  1118    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  57.45 
 
 
678 aa  759    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  82.07 
 
 
666 aa  1121    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  79.59 
 
 
681 aa  1085    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  70.55 
 
 
667 aa  963    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  63.66 
 
 
669 aa  843    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  58.19 
 
 
662 aa  780    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  64.02 
 
 
671 aa  870    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  59.48 
 
 
671 aa  771    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  60.67 
 
 
673 aa  795    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  57.68 
 
 
682 aa  753    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  58.95 
 
 
667 aa  739    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  77.37 
 
 
680 aa  1079    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  56.22 
 
 
684 aa  738    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  57.86 
 
 
673 aa  748    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  59.62 
 
 
671 aa  779    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  56.18 
 
 
682 aa  734    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  57.82 
 
 
682 aa  754    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  53.99 
 
 
669 aa  697    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  57.68 
 
 
682 aa  757    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  59.16 
 
 
667 aa  735    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  59.62 
 
 
671 aa  757    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  59.04 
 
 
671 aa  779    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  59.62 
 
 
691 aa  764    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  58.96 
 
 
671 aa  758    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  56.73 
 
 
682 aa  734    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  56.96 
 
 
691 aa  739    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  59.74 
 
 
667 aa  757    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  59.53 
 
 
662 aa  788    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  78.46 
 
 
676 aa  1099    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  59.8 
 
 
668 aa  786    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  56.1 
 
 
696 aa  733    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  62.03 
 
 
670 aa  815    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
685 aa  1404    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  71.28 
 
 
667 aa  973    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  58.8 
 
 
678 aa  774    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  58.9 
 
 
671 aa  759    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  68.08 
 
 
670 aa  932    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  57.27 
 
 
668 aa  736    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  69.68 
 
 
667 aa  944    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  48.92 
 
 
655 aa  631  1e-179  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  48.62 
 
 
656 aa  626  1e-178  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.99 
 
 
691 aa  580  1e-164  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.31 
 
 
668 aa  530  1e-149  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  55.58 
 
 
450 aa  523  1e-147  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  46.59 
 
 
666 aa  518  1e-146  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  54.72 
 
 
498 aa  518  1.0000000000000001e-145  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46 
 
 
667 aa  515  1.0000000000000001e-145  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  42.69 
 
 
681 aa  508  9.999999999999999e-143  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  42.43 
 
 
652 aa  505  9.999999999999999e-143  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  41.48 
 
 
654 aa  504  1e-141  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  41.34 
 
 
654 aa  504  1e-141  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  42.55 
 
 
665 aa  504  1e-141  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  42.4 
 
 
649 aa  499  1e-140  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  42.42 
 
 
654 aa  502  1e-140  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_011694  PHATRDRAFT_51245  carboxylase propionyl-coa carboxylase  41.73 
 
 
664 aa  500  1e-140  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  46.13 
 
 
674 aa  499  1e-140  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  41.92 
 
 
649 aa  497  1e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.75 
 
 
666 aa  496  1e-139  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1803  acetyl-CoA carboxylase biotin carboxylase subunit  53.94 
 
 
445 aa  496  1e-139  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.220445  n/a   
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  54.04 
 
 
450 aa  498  1e-139  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  43.47 
 
 
666 aa  496  1e-139  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.44 
 
 
672 aa  498  1e-139  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  45.73 
 
 
674 aa  496  1e-139  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  45.4 
 
 
712 aa  493  9.999999999999999e-139  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2549  acetyl-CoA carboxylase biotin carboxylase subunit  53.73 
 
 
445 aa  493  9.999999999999999e-139  Bacillus cereus ATCC 10987  Bacteria  normal  0.569347  n/a   
 
 
-
 
NC_005945  BAS2370  acetyl-CoA carboxylase biotin carboxylase subunit  53.94 
 
 
445 aa  493  9.999999999999999e-139  Bacillus anthracis str. Sterne  Bacteria  normal  0.17472  n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  42.72 
 
 
643 aa  493  9.999999999999999e-139  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2328  acetyl-CoA carboxylase biotin carboxylase subunit  53.94 
 
 
445 aa  493  9.999999999999999e-139  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.611182  n/a   
 
 
-
 
NC_006274  BCZK2286  acetyl-CoA carboxylase biotin carboxylase subunit  53.94 
 
 
445 aa  493  9.999999999999999e-139  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  43.86 
 
 
670 aa  492  9.999999999999999e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_011658  BCAH187_A2604  acetyl-CoA carboxylase biotin carboxylase subunit  53.73 
 
 
445 aa  494  9.999999999999999e-139  Bacillus cereus AH187  Bacteria  normal  0.189257  n/a   
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  51.18 
 
 
493 aa  494  9.999999999999999e-139  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_011772  BCG9842_B2811  acetyl-CoA carboxylase biotin carboxylase subunit  53.3 
 
 
445 aa  492  9.999999999999999e-139  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000387379 
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  40.97 
 
 
653 aa  492  9.999999999999999e-139  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  40.78 
 
 
661 aa  493  9.999999999999999e-139  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2548  acetyl-CoA carboxylase biotin carboxylase subunit  53.94 
 
 
445 aa  493  9.999999999999999e-139  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  43.63 
 
 
675 aa  492  9.999999999999999e-139  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2356  acetyl-CoA carboxylase biotin carboxylase subunit  53.3 
 
 
445 aa  492  9.999999999999999e-139  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.488234  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  42.78 
 
 
662 aa  495  9.999999999999999e-139  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  44.46 
 
 
673 aa  495  9.999999999999999e-139  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  52.48 
 
 
480 aa  492  9.999999999999999e-139  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  40.78 
 
 
661 aa  493  9.999999999999999e-139  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2512  acetyl-CoA carboxylase biotin carboxylase subunit  53.52 
 
 
445 aa  492  1e-137  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
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