More than 300 homologs were found in PanDaTox collection
for query gene Mext_2996 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  85.54 
 
 
671 aa  1125    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  61.47 
 
 
667 aa  783    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  57.75 
 
 
682 aa  711    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  61.92 
 
 
667 aa  792    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  74.26 
 
 
675 aa  965    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  66.91 
 
 
669 aa  864    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  71.73 
 
 
671 aa  942    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  56.05 
 
 
691 aa  699    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  57.75 
 
 
682 aa  711    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  67.51 
 
 
668 aa  887    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  62.16 
 
 
666 aa  794    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  57.52 
 
 
682 aa  702    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  56.27 
 
 
667 aa  697    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  56.19 
 
 
675 aa  692    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
684 aa  1387    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  69.79 
 
 
671 aa  899    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  56.7 
 
 
678 aa  715    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  62.2 
 
 
695 aa  800    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  55.38 
 
 
682 aa  687    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  55.99 
 
 
682 aa  702    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  59.7 
 
 
660 aa  725    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  56.09 
 
 
652 aa  694    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  56.06 
 
 
696 aa  689    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  59.79 
 
 
662 aa  739    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  56.81 
 
 
682 aa  706    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  72.17 
 
 
671 aa  934    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  59.09 
 
 
673 aa  724    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  63.3 
 
 
671 aa  810    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  59.91 
 
 
680 aa  756    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  56.17 
 
 
684 aa  693    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  61.02 
 
 
667 aa  768    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  58.02 
 
 
662 aa  711    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  61.62 
 
 
667 aa  786    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  72.62 
 
 
671 aa  944    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  56.48 
 
 
682 aa  696    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  72.71 
 
 
668 aa  929    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  58.95 
 
 
685 aa  754    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  99.7 
 
 
667 aa  1348    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  72.62 
 
 
671 aa  937    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  60.99 
 
 
666 aa  785    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  60.12 
 
 
670 aa  779    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  71.57 
 
 
691 aa  920    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  84.84 
 
 
673 aa  1136    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  72.62 
 
 
671 aa  920    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  59.56 
 
 
669 aa  775    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  60 
 
 
669 aa  776    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  60.06 
 
 
681 aa  773    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  59.97 
 
 
676 aa  782    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  57.61 
 
 
668 aa  707    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  87.11 
 
 
667 aa  1135    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  56.26 
 
 
678 aa  709    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  64.5 
 
 
673 aa  844    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  55.65 
 
 
669 aa  682    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  63.64 
 
 
670 aa  824    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  62.05 
 
 
666 aa  799    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  95.65 
 
 
667 aa  1262    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  47.26 
 
 
655 aa  593  1e-168  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  45.58 
 
 
656 aa  586  1e-166  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  44.62 
 
 
691 aa  568  1e-161  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  50.44 
 
 
667 aa  540  9.999999999999999e-153  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  44.16 
 
 
665 aa  525  1e-147  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  44.09 
 
 
681 aa  520  1e-146  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.14 
 
 
666 aa  514  1e-144  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3559  carbamoyl-phosphate synthase L chain ATP-binding  46.45 
 
 
670 aa  509  1e-143  Burkholderia phymatum STM815  Bacteria  normal  normal  0.733851 
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  45.55 
 
 
662 aa  509  1e-143  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.97 
 
 
674 aa  505  9.999999999999999e-143  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.83 
 
 
668 aa  508  9.999999999999999e-143  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1463  3-methylcrotonoyl-CoA carboxylase, alpha subunit  48.15 
 
 
674 aa  504  1e-141  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  43.66 
 
 
652 aa  505  1e-141  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_013757  Gobs_1473  Carbamoyl-phosphate synthase L chain ATP- binding protein  44.81 
 
 
666 aa  502  1e-141  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  45.53 
 
 
675 aa  500  1e-140  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  46.9 
 
 
660 aa  501  1e-140  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_008391  Bamb_4585  carbamoyl-phosphate synthase L chain, ATP-binding  46.67 
 
 
666 aa  496  1e-139  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.747689 
 
 
-
 
NC_010086  Bmul_3469  carbamoyl-phosphate synthase L chain ATP-binding  46.22 
 
 
670 aa  496  1e-139  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  42.25 
 
 
686 aa  498  1e-139  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3536  Carbamoyl-phosphate synthase L chain ATP- binding protein  52.82 
 
 
517 aa  495  1e-139  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2809  Carbamoyl-phosphate synthase L chain ATP-binding  45.05 
 
 
670 aa  496  1e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.978814  n/a   
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  45.47 
 
 
670 aa  495  9.999999999999999e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_006368  lpp1792  hypothetical protein  41.12 
 
 
654 aa  493  9.999999999999999e-139  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  41.26 
 
 
654 aa  493  9.999999999999999e-139  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  43.29 
 
 
653 aa  494  9.999999999999999e-139  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  46.47 
 
 
662 aa  492  9.999999999999999e-139  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  45.51 
 
 
643 aa  494  9.999999999999999e-139  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  54.67 
 
 
450 aa  493  9.999999999999999e-139  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5118  carbamoyl-phosphate synthase L chain ATP-binding  46.52 
 
 
666 aa  491  1e-137  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  45.68 
 
 
712 aa  490  1e-137  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  46.14 
 
 
674 aa  491  1e-137  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4689  Carbamoyl-phosphate synthase L chain ATP-binding  45.3 
 
 
692 aa  492  1e-137  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  52.06 
 
 
689 aa  491  1e-137  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  47.14 
 
 
666 aa  488  1e-136  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_011886  Achl_1404  Carbamoyl-phosphate synthase L chain ATP-binding  43.71 
 
 
733 aa  485  1e-136  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000354677 
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  42.4 
 
 
666 aa  487  1e-136  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5237  carbamoyl-phosphate synthase L chain, ATP-binding  45.63 
 
 
665 aa  486  1e-136  Burkholderia cenocepacia HI2424  Bacteria  normal  0.578975  normal  0.758885 
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  42.19 
 
 
700 aa  488  1e-136  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  46 
 
 
674 aa  487  1e-136  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2248  carbamoyl-phosphate synthase L chain, ATP-binding  42.01 
 
 
697 aa  486  1e-136  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3130  carbamoyl-phosphate synthase L chain, ATP-binding  45.63 
 
 
665 aa  486  1e-136  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  55.07 
 
 
480 aa  488  1e-136  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  43.37 
 
 
649 aa  483  1e-135  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_008228  Patl_2928  carbamoyl-phosphate synthase L chain, ATP-binding  42.33 
 
 
675 aa  482  1e-135  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.321789  n/a   
 
 
-
 
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