| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2928 |
|---|
| Symbol | |
|---|
| ID | 4174694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3549632 |
|---|
| End bp | 3551659 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055949 |
|---|
| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
|---|
| Protein accession | YP_662490 |
|---|
| Protein GI | 109899235 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.321789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAA AACTTCTAAT TGCCAACCGT GGCGAAATTT GCTGCCGCAT TATCAACACG
GCCAAACGTA TGGGTATCCA AACCGTTGCG CTTTATTCTG ATGCTGATAA GAACGCGTTG
CATGTAAAAA TGGCCGACGA AGCGATACAT ATTGGCCCTT CACCATCTAA CCAAAGTTAT
TTAAAAGTGG ATAAGGTCCT TGCTGCCGCT AAAGCAACCG GCGCGGATGC TATCCACCCT
GGTTATGGGT TTCTATCTGA AAACGCTGAA TTTGCCAAAG CCTGTGCAGA TAACAATATT
ATCTTTGTGG GCCCGCCTGT TGAAGCAATT GACGCAATGG GCTCAAAATC TGCGGCTAAA
CACATTATGC AACAGGCCAA TGTGCCCTTA GTGCCAGGGT ACCACGGCGA CGACCAGTCA
CCGGCGCTGA TAAAAAAACA CGCCGATGAC ATGGGCTATC CCGTATTACT CAAAGCAGCT
GCCGGTGGTG GTGGTAAAGG AATGCGCCAA GTTTGGAGCG AGGATGAATT TGATGACGCA
TTAGCCGCAG CTAAACGTGA AGCGATGTCG AGTTTTAATG ACGACATAAT GTTAGTTGAA
AAGTACTTAA CCCAACCGCG TCACGTTGAG GTACAAGTTT TTTGTGATCA CCATGGAAAT
GGTGTGCATA TATTTGAGCG CGACTGTTCA GTGCAAAGAC GTCATCAAAA AGTCGTTGAA
GAAGCCCCCG CGTTTAAGAT GCCCCCTGAA TTACGTGTAG CTATGGGCGA TGCGGCGTTA
AAAGCCGCCC AAGCCATTAA CTATGTAGGT GCAGGTACTG TCGAGTTTCT GCTCGATACG
GATGGCAGCT TCTACTTTAT GGAAATGAAT ACTCGCTTGC AGGTGGAACA TCCGGTCAGT
GAGATGATTT CAGGGCAAGA TTTGGTGGAA TGGCAACTGC GGGTCGCCGC CAATGAAACC
TTGCCCAAAA CACAAGACGA ATTACATATT AATGGGCATG CATTTGAGGC ACGAATCTAC
GCCGAGGATC CAGATAATGA GTTCCTGCCT GCCACAGGTA CACTTCATCT ATTAGAAACA
CCACAAGAAT CAGAACATGT ACGCATTGAT AGCGGTGTGG TTCAGGGTGA TGAGGTATCG
GTTTATTATG ATCCCATGAT CGCTAAGTTG ATTGTGTGGG ATACAGATCG AGAACGTGCT
TTAGCACGTT TAAGTCAGTC TTTGGCTGAA TATCGTATTG ATGGTGTGAT AACAAATATT
CCATTCCTGC GCAGCCTTAT TGACACCCAA GCGTTTAAAG ATGAAGAGAT CGATACCCGT
TTTATCGAAA CTCACCACGA TGAGATTTTT AACAAAGATA AGCAAACCCA CGAGCATCAA
ATACTGAATT TGGCCATGTA CTTATCATTA AATGAACAAG CTATCACCTC TCCTAGTAAT
CAAGATAGTC AGTCTCCATG GGGATCCGTA AGTGATTGGC GAGCAAACGA ACGTTATCAA
AGCCGCTACT GCATCCAGAT GCATGGTGAG GCTTATGAAA CTGTGGTTGA ACGGATAAAA
AGTGACAACC ACGCCCCCCA TCAGCAGGGT ACATTTATTG TTAAATTAGG GGATCAAACT
TATCAGTGCG AAGGGCAATT AGCAGGCAAT CGATTACTGG CAACCGTTAA TGGGCATAGT
GAGAGCGTCA CCATCAATAG AATTGACCAT GACTACGCGC TCTTTCACGC CAATGGCATG
ACGAGATTCA GGCATATCCA GAAAGACTTA GGTGTTGCTG ATGAAAACGA CCAGCACGGT
GCTTTCGTAG CGCCAATGAA CGGCACGGTA GTGACCCTTT TAGTTAAGCC AAAGCAAAAC
GTTAAAAAAG GTCAAACCTT AATGATAATG GAAGCCATGA AAATGGAACA TGCCATTAAA
GCAACGCAAA ATGGTCAAGT GCAGGAATTC TACTATCAGG CTGGCGAATT AGTCGATGGC
GGTGCAGCCT TATTAGACTT TGTAGCTGAT GAGGAGCCTT TATCATGA
|
|---|
| Protein sequence | MIKKLLIANR GEICCRIINT AKRMGIQTVA LYSDADKNAL HVKMADEAIH IGPSPSNQSY
LKVDKVLAAA KATGADAIHP GYGFLSENAE FAKACADNNI IFVGPPVEAI DAMGSKSAAK
HIMQQANVPL VPGYHGDDQS PALIKKHADD MGYPVLLKAA AGGGGKGMRQ VWSEDEFDDA
LAAAKREAMS SFNDDIMLVE KYLTQPRHVE VQVFCDHHGN GVHIFERDCS VQRRHQKVVE
EAPAFKMPPE LRVAMGDAAL KAAQAINYVG AGTVEFLLDT DGSFYFMEMN TRLQVEHPVS
EMISGQDLVE WQLRVAANET LPKTQDELHI NGHAFEARIY AEDPDNEFLP ATGTLHLLET
PQESEHVRID SGVVQGDEVS VYYDPMIAKL IVWDTDRERA LARLSQSLAE YRIDGVITNI
PFLRSLIDTQ AFKDEEIDTR FIETHHDEIF NKDKQTHEHQ ILNLAMYLSL NEQAITSPSN
QDSQSPWGSV SDWRANERYQ SRYCIQMHGE AYETVVERIK SDNHAPHQQG TFIVKLGDQT
YQCEGQLAGN RLLATVNGHS ESVTINRIDH DYALFHANGM TRFRHIQKDL GVADENDQHG
AFVAPMNGTV VTLLVKPKQN VKKGQTLMIM EAMKMEHAIK ATQNGQVQEF YYQAGELVDG
GAALLDFVAD EEPLS
|
|---|
| |