More than 300 homologs were found in PanDaTox collection
for query gene Avi_5683 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  58.3 
 
 
682 aa  733    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  63.32 
 
 
660 aa  811    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  59.04 
 
 
668 aa  739    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  59.06 
 
 
678 aa  753    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  60.48 
 
 
662 aa  777    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  77.63 
 
 
667 aa  1046    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  60.75 
 
 
671 aa  776    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  76.28 
 
 
667 aa  1033    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  61.13 
 
 
671 aa  769    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  76.13 
 
 
670 aa  1035    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  56.18 
 
 
682 aa  709    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  71.18 
 
 
681 aa  962    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  57.12 
 
 
667 aa  710    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  61.3 
 
 
668 aa  749    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  72.67 
 
 
666 aa  961    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  60.66 
 
 
667 aa  777    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  59.46 
 
 
671 aa  754    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  60.81 
 
 
667 aa  767    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  65.33 
 
 
669 aa  857    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  71.86 
 
 
695 aa  954    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  71.77 
 
 
666 aa  952    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  80.78 
 
 
667 aa  1085    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  59.44 
 
 
675 aa  779    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  59.79 
 
 
662 aa  770    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  100 
 
 
666 aa  1362    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  57.82 
 
 
669 aa  748    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  60.6 
 
 
671 aa  762    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  60.36 
 
 
673 aa  783    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  57.48 
 
 
675 aa  728    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  70.99 
 
 
680 aa  952    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  54.4 
 
 
684 aa  690    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  60.54 
 
 
671 aa  763    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  56.18 
 
 
682 aa  713    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  57.38 
 
 
669 aa  745    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  60.6 
 
 
671 aa  772    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  56.03 
 
 
682 aa  702    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  60.36 
 
 
652 aa  786    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  60.6 
 
 
691 aa  747    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  61.72 
 
 
671 aa  769    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  57.83 
 
 
682 aa  731    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  60.48 
 
 
667 aa  756    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  58.44 
 
 
682 aa  737    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  70.81 
 
 
676 aa  967    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  59.29 
 
 
668 aa  773    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  60.71 
 
 
673 aa  770    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  63.91 
 
 
673 aa  833    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  58 
 
 
682 aa  729    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  64.02 
 
 
670 aa  853    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  55.01 
 
 
691 aa  699    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  71.2 
 
 
685 aa  965    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  55.02 
 
 
696 aa  691    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  59.5 
 
 
678 aa  761    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  63.13 
 
 
671 aa  843    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  77.18 
 
 
667 aa  1039    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  57.85 
 
 
669 aa  738    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  60.81 
 
 
684 aa  768    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  47.53 
 
 
656 aa  626  1e-178  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  48.35 
 
 
655 aa  625  1e-177  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  46.3 
 
 
691 aa  597  1e-169  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  45.68 
 
 
652 aa  531  1e-149  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  43.58 
 
 
689 aa  518  1e-146  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  47.89 
 
 
666 aa  512  1e-144  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  44.53 
 
 
665 aa  512  1e-144  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_011694  PHATRDRAFT_51245  carboxylase propionyl-coa carboxylase  43.43 
 
 
664 aa  509  1e-143  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_007908  Rfer_2815  carbamoyl-phosphate synthase L chain, ATP-binding  45.23 
 
 
654 aa  506  9.999999999999999e-143  Rhodoferax ferrireducens T118  Bacteria  normal  0.102576  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  42.28 
 
 
681 aa  504  1e-141  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3950  carbamoyl-phosphate synthase L chain, ATP-binding  43.56 
 
 
653 aa  503  1e-141  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.13606  normal 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  54.93 
 
 
450 aa  504  1e-141  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.83 
 
 
668 aa  502  1e-140  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  43.22 
 
 
666 aa  499  1e-140  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  43.3 
 
 
649 aa  496  1e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_009656  PSPA7_2263  putative biotin carboxylase/biotin carboxyl carrier protein  44.54 
 
 
661 aa  496  1e-139  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  52.12 
 
 
498 aa  495  1e-139  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  46.81 
 
 
667 aa  494  9.999999999999999e-139  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007798  NSE_0815  propionyl-CoA carboxylase, alpha subunit  41.34 
 
 
652 aa  493  9.999999999999999e-139  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.904428  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.02 
 
 
672 aa  493  9.999999999999999e-139  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_013730  Slin_3536  Carbamoyl-phosphate synthase L chain ATP- binding protein  51.97 
 
 
517 aa  494  9.999999999999999e-139  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_26670  putative biotin carboxylase/biotin carboxyl carrier protein  44.31 
 
 
661 aa  492  9.999999999999999e-139  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.795664  normal 
 
 
-
 
NC_013061  Phep_3289  acetyl-CoA carboxylase, biotin carboxylase  55.56 
 
 
496 aa  489  1e-137  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.191323 
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  44.21 
 
 
649 aa  490  1e-137  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  40.36 
 
 
654 aa  489  1e-137  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.89 
 
 
666 aa  491  1e-137  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  52.47 
 
 
448 aa  492  1e-137  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_013132  Cpin_1521  acetyl-CoA carboxylase, biotin carboxylase  54.66 
 
 
494 aa  486  1e-136  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  43.67 
 
 
662 aa  487  1e-136  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  40.58 
 
 
654 aa  486  1e-136  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  41.74 
 
 
661 aa  487  1e-136  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  52.98 
 
 
480 aa  485  1e-136  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_013037  Dfer_3259  Carbamoyl-phosphate synthase L chain ATP- binding  53.93 
 
 
501 aa  488  1e-136  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0256085 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  45.61 
 
 
670 aa  488  1e-136  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  41.74 
 
 
661 aa  487  1e-136  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_00711  acetyl-CoA carboxylase biotin carboxylase subunit  50.89 
 
 
449 aa  484  1e-135  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  53.88 
 
 
661 aa  482  1e-135  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  45.81 
 
 
674 aa  485  1e-135  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  54.22 
 
 
450 aa  484  1e-135  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  54.57 
 
 
643 aa  484  1e-135  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2535  carbamoyl-phosphate synthase L chain, ATP-binding  44.86 
 
 
671 aa  483  1e-135  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  44.63 
 
 
666 aa  485  1e-135  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_008816  A9601_00721  acetyl-CoA carboxylase biotin carboxylase subunit  50.89 
 
 
449 aa  483  1e-135  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.249054  n/a   
 
 
-
 
NC_007406  Nwi_1604  carbamoyl-phosphate synthetase large chain  42.48 
 
 
668 aa  481  1e-134  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0456964  normal  0.316567 
 
 
-
 
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