More than 300 homologs were found in PanDaTox collection
for query gene RPB_2367 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  56.7 
 
 
678 aa  712    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  55.38 
 
 
682 aa  686    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  92.1 
 
 
671 aa  1256    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  62.35 
 
 
667 aa  799    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  73.96 
 
 
667 aa  916    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  56.83 
 
 
678 aa  711    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  65.09 
 
 
673 aa  850    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  63.43 
 
 
666 aa  813    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  59.48 
 
 
685 aa  781    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  62.2 
 
 
667 aa  795    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  56.44 
 
 
667 aa  709    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  72.27 
 
 
673 aa  945    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  68.15 
 
 
668 aa  864    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  81.37 
 
 
671 aa  1082    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  63.64 
 
 
671 aa  837    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  55.89 
 
 
652 aa  677    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  63.43 
 
 
695 aa  813    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  62.24 
 
 
666 aa  803    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  55.52 
 
 
682 aa  688    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  56.25 
 
 
682 aa  705    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  60.6 
 
 
666 aa  771    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  56.14 
 
 
682 aa  694    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  55.62 
 
 
682 aa  688    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  58.07 
 
 
662 aa  733    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  58.42 
 
 
669 aa  768    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  54.31 
 
 
696 aa  669    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  100 
 
 
671 aa  1358    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  55.47 
 
 
682 aa  697    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  57.6 
 
 
673 aa  724    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  59.5 
 
 
660 aa  741    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  60.97 
 
 
667 aa  794    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  66.42 
 
 
669 aa  867    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  55.28 
 
 
675 aa  697    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  60.12 
 
 
680 aa  772    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  54.59 
 
 
684 aa  686    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  73.44 
 
 
671 aa  949    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  72.02 
 
 
667 aa  922    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  60.51 
 
 
667 aa  762    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  91.8 
 
 
671 aa  1244    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  55.96 
 
 
682 aa  703    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  59.85 
 
 
681 aa  772    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  54.65 
 
 
691 aa  712    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  72.17 
 
 
684 aa  925    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  94.93 
 
 
691 aa  1243    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  83.9 
 
 
671 aa  1103    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  68.69 
 
 
668 aa  875    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  84.8 
 
 
671 aa  1125    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  60.5 
 
 
676 aa  785    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  56.69 
 
 
668 aa  711    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  54.93 
 
 
669 aa  689    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  57.96 
 
 
662 aa  737    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  72.62 
 
 
667 aa  932    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  74.07 
 
 
675 aa  994    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  63.74 
 
 
670 aa  825    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  59.24 
 
 
669 aa  766    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  60.56 
 
 
670 aa  787    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  44.9 
 
 
656 aa  561  1e-158  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  45.64 
 
 
655 aa  559  1e-158  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  43.99 
 
 
691 aa  536  1e-151  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.05 
 
 
666 aa  509  1e-143  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  56.28 
 
 
450 aa  508  9.999999999999999e-143  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  40.8 
 
 
661 aa  499  1e-140  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  40.8 
 
 
661 aa  500  1e-140  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  43.86 
 
 
665 aa  501  1e-140  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  45.1 
 
 
670 aa  494  9.999999999999999e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  45.41 
 
 
673 aa  493  9.999999999999999e-139  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.41 
 
 
668 aa  493  9.999999999999999e-139  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2933  carbamoyl-phosphate synthase L chain, ATP-binding  45.09 
 
 
671 aa  493  9.999999999999999e-139  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011694  PHATRDRAFT_51245  carboxylase propionyl-coa carboxylase  43.13 
 
 
664 aa  492  9.999999999999999e-139  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_007958  RPD_0350  carbamoyl-phosphate synthase L chain, ATP-binding  45.52 
 
 
679 aa  494  9.999999999999999e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.000448558 
 
 
-
 
NC_007958  RPD_2535  carbamoyl-phosphate synthase L chain, ATP-binding  45.52 
 
 
671 aa  494  9.999999999999999e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  45.02 
 
 
666 aa  494  9.999999999999999e-139  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
NC_004310  BR0018  biotin carboxylase  45.41 
 
 
673 aa  490  1e-137  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  54.13 
 
 
480 aa  489  1e-137  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  44.36 
 
 
662 aa  489  1e-137  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6229  Carbamoyl-phosphate synthase L chain ATP- binding  45.37 
 
 
643 aa  490  1e-137  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  53.14 
 
 
446 aa  486  1e-136  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  54.89 
 
 
450 aa  488  1e-136  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_26670  putative biotin carboxylase/biotin carboxyl carrier protein  42.67 
 
 
661 aa  485  1e-136  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.795664  normal 
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  44.43 
 
 
662 aa  484  1e-135  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_011004  Rpal_2809  Carbamoyl-phosphate synthase L chain ATP-binding  43.66 
 
 
670 aa  483  1e-135  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.978814  n/a   
 
 
-
 
NC_009092  Shew_2573  carbamoyl-phosphate synthase L chain, ATP-binding  42.26 
 
 
677 aa  479  1e-134  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  41.83 
 
 
681 aa  480  1e-134  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2512  acetyl-CoA carboxylase biotin carboxylase subunit  52.89 
 
 
445 aa  479  1e-134  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2811  acetyl-CoA carboxylase biotin carboxylase subunit  52.89 
 
 
445 aa  479  1e-134  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000387379 
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  53.14 
 
 
448 aa  482  1e-134  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_008740  Maqu_2807  carbamoyl-phosphate synthase L chain, ATP-binding  43.47 
 
 
652 aa  481  1e-134  Marinobacter aquaeolei VT8  Bacteria  normal  0.167198  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  59.21 
 
 
667 aa  482  1e-134  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  42.33 
 
 
666 aa  478  1e-133  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2370  acetyl-CoA carboxylase biotin carboxylase subunit  52.22 
 
 
445 aa  475  1e-133  Bacillus anthracis str. Sterne  Bacteria  normal  0.17472  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  45.78 
 
 
666 aa  478  1e-133  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_011658  BCAH187_A2604  acetyl-CoA carboxylase biotin carboxylase subunit  52.44 
 
 
445 aa  476  1e-133  Bacillus cereus AH187  Bacteria  normal  0.189257  n/a   
 
 
-
 
NC_007530  GBAA_2548  acetyl-CoA carboxylase biotin carboxylase subunit  52.22 
 
 
445 aa  475  1e-133  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1598  acetyl-CoA carboxylase, biotin carboxylase  52.69 
 
 
446 aa  476  1e-133  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000269909  n/a   
 
 
-
 
NC_007925  RPC_2781  carbamoyl-phosphate synthase L chain, ATP-binding  53.68 
 
 
667 aa  476  1e-133  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0940378  normal  0.476201 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.48 
 
 
663 aa  476  1e-133  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_008541  Arth_1386  carbamoyl-phosphate synthase L chain, ATP-binding  42.42 
 
 
752 aa  475  1e-133  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0039  carbamoyl-phosphate synthase L chain ATP-binding  44.67 
 
 
655 aa  478  1e-133  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.540073  n/a   
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  45.16 
 
 
679 aa  475  1e-133  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_013037  Dfer_3259  Carbamoyl-phosphate synthase L chain ATP- binding  52.54 
 
 
501 aa  476  1e-133  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0256085 
 
 
-
 
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