More than 300 homologs were found in PanDaTox collection
for query gene Vapar_2131 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_0913  acetyl-CoA carboxylase, biotin carboxylase  69.29 
 
 
678 aa  910    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1318  carbamoyl-phosphate synthase L chain ATP-binding  54.81 
 
 
668 aa  669    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.185641  normal 
 
 
-
 
NC_010511  M446_0385  carbamoyl-phosphate synthase L chain ATP-binding  56.75 
 
 
671 aa  700    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.519853 
 
 
-
 
NC_011894  Mnod_1878  Carbamoyl-phosphate synthase L chain ATP-binding  56.91 
 
 
673 aa  708    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241293  n/a   
 
 
-
 
NC_008782  Ajs_2043  carbamoyl-phosphate synthase L chain, ATP-binding  82.09 
 
 
682 aa  1144    Acidovorax sp. JS42  Bacteria  normal  0.114869  normal 
 
 
-
 
NC_004310  BR1189  propionyl-CoA carboxylase, alpha subunit  56.45 
 
 
667 aa  709    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6137  Carbamoyl-phosphate synthase L chain ATP-binding  56.52 
 
 
667 aa  702    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.768375  normal  0.18157 
 
 
-
 
NC_009485  BBta_4902  putative acyl-CoA carboxylase biotin-carrying subunit  55.51 
 
 
671 aa  681    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.928975  normal  0.0609126 
 
 
-
 
NC_011662  Tmz1t_3483  acetyl-CoA carboxylase, biotin carboxylase  69.94 
 
 
662 aa  912    Thauera sp. MZ1T  Bacteria  normal  0.569614  n/a   
 
 
-
 
NC_009505  BOV_1149  propionyl-CoA carboxylase, alpha subunit  56.12 
 
 
667 aa  702    Brucella ovis ATCC 25840  Bacteria  normal  0.12286  n/a   
 
 
-
 
NC_011666  Msil_3786  Carbamoyl-phosphate synthase L chain ATP-binding  53.92 
 
 
668 aa  641    Methylocella silvestris BL2  Bacteria  n/a    normal  0.34193 
 
 
-
 
NC_008687  Pden_3684  carbamoyl-phosphate synthase L chain, ATP-binding  57.39 
 
 
685 aa  756    Paracoccus denitrificans PD1222  Bacteria  normal  0.82326  normal 
 
 
-
 
NC_009719  Plav_2772  carbamoyl-phosphate synthase L chain ATP-binding  57.99 
 
 
671 aa  734    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.187116 
 
 
-
 
NC_009049  Rsph17029_0865  carbamoyl-phosphate synthase L chain, ATP-binding  55.51 
 
 
666 aa  715    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246208  normal 
 
 
-
 
NC_009667  Oant_2002  carbamoyl-phosphate synthase L chain ATP-binding  56.73 
 
 
667 aa  712    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.548064  n/a   
 
 
-
 
NC_010725  Mpop_3181  Carbamoyl-phosphate synthase L chain ATP-binding  57.25 
 
 
667 aa  705    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase  68.62 
 
 
667 aa  893    Dechloromonas aromatica RCB  Bacteria  normal  0.666441  normal  0.37304 
 
 
-
 
NC_011992  Dtpsy_1853  Carbamoyl-phosphate synthase L chain ATP-binding  82.23 
 
 
682 aa  1144    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3585  Carbamoyl-phosphate synthase L chain ATP-binding  54.84 
 
 
671 aa  699    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.930093  n/a   
 
 
-
 
NC_010338  Caul_3000  carbamoyl-phosphate synthase L chain ATP-binding  51.89 
 
 
669 aa  646    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase  81.06 
 
 
682 aa  1116    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.315609  normal 
 
 
-
 
NC_007406  Nwi_1736  propionyl-coenzyme A carboxylase alpha polypeptide  53.99 
 
 
671 aa  673    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.124901 
 
 
-
 
NC_009511  Swit_2889  carbamoyl-phosphate synthase L chain, ATP-binding  56.5 
 
 
660 aa  707    Sphingomonas wittichii RW1  Bacteria  normal  0.894613  normal  0.421393 
 
 
-
 
NC_009620  Smed_4238  carbamoyl-phosphate synthase L chain ATP-binding  55.34 
 
 
670 aa  701    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2191  propionyl-CoA carboxylase alpha subunit  55.65 
 
 
695 aa  714    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2996  carbamoyl-phosphate synthase L chain ATP-binding  55.99 
 
 
684 aa  689    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2131  acetyl-CoA carboxylase, biotin carboxylase  100 
 
 
682 aa  1399    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2302  carbamoyl-phosphate synthase L chain, ATP-binding  55.95 
 
 
666 aa  724    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4726  carbamoyl-phosphate synthase L chain ATP-binding  56.22 
 
 
675 aa  706    Xanthobacter autotrophicus Py2  Bacteria  normal  0.248111  normal  0.179012 
 
 
-
 
NC_007643  Rru_A0052  biotin carboxylase  58.13 
 
 
662 aa  755    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2367  carbamoyl-phosphate synthase L chain, ATP-binding  56.14 
 
 
671 aa  689    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.60166 
 
 
-
 
NC_007794  Saro_0815  carbamoyl-phosphate synthase L chain, ATP-binding  56.38 
 
 
673 aa  695    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.450975  n/a   
 
 
-
 
NC_012850  Rleg_2077  Carbamoyl-phosphate synthase L chain ATP-binding  56.87 
 
 
673 aa  715    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.776074 
 
 
-
 
NC_011988  Avi_5683  acetyl-CoA carboxylase biotin carboxylase  56.18 
 
 
666 aa  713    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0385  carbamoyl-phosphate synthase L chain, ATP-binding  53.28 
 
 
652 aa  676    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3370  carbamoyl-phosphate synthase L chain, ATP-binding  55.57 
 
 
680 aa  722    Jannaschia sp. CCS1  Bacteria  normal  0.447293  normal 
 
 
-
 
NC_007908  Rfer_2802  carbamoyl-phosphate synthase L chain, ATP-binding  79.94 
 
 
684 aa  1098    Rhodoferax ferrireducens T118  Bacteria  normal  0.314171  n/a   
 
 
-
 
NC_011369  Rleg2_1874  Carbamoyl-phosphate synthase L chain ATP-binding  57.45 
 
 
669 aa  726    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0599498 
 
 
-
 
NC_008752  Aave_2515  acetyl-CoA carboxylase, biotin carboxylase  84.43 
 
 
682 aa  1173    Acidovorax citrulli AAC00-1  Bacteria  normal  0.370768  normal  0.591821 
 
 
-
 
NC_011757  Mchl_3221  Carbamoyl-phosphate synthase L chain ATP-binding  55.99 
 
 
667 aa  690    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.390977 
 
 
-
 
NC_007925  RPC_3352  carbamoyl-phosphate synthase L chain, ATP-binding  56.1 
 
 
671 aa  687    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.124303  normal 
 
 
-
 
NC_007948  Bpro_2167  carbamoyl-phosphate synthase L chain, ATP-binding  80.18 
 
 
682 aa  1122    Polaromonas sp. JS666  Bacteria  normal  normal  0.283926 
 
 
-
 
NC_009952  Dshi_0723  carbamoyl-phosphate synthase L chain ATP-binding  55.41 
 
 
681 aa  719    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.124518  normal 
 
 
-
 
NC_007958  RPD_3093  carbamoyl-phosphate synthase L chain, ATP-binding  56.06 
 
 
691 aa  675    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0379768 
 
 
-
 
NC_010524  Lcho_2693  carbamoyl-phosphate synthase L chain ATP-binding  76.59 
 
 
691 aa  1065    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.25688 
 
 
-
 
NC_007964  Nham_2165  carbamoyl-phosphate synthase L chain, ATP-binding  55.28 
 
 
671 aa  684    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1017  propionyl-CoA carboxylase, alpha subunit  75.07 
 
 
675 aa  1034    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.848501 
 
 
-
 
NC_010505  Mrad2831_2750  carbamoyl-phosphate synthase L chain ATP-binding  55.94 
 
 
667 aa  679    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0185011  normal  0.216435 
 
 
-
 
NC_010002  Daci_3756  acetyl-CoA carboxylase, biotin carboxylase  80.76 
 
 
682 aa  1117    Delftia acidovorans SPH-1  Bacteria  normal  0.0388867  normal  0.0417354 
 
 
-
 
NC_008044  TM1040_1869  carbamoyl-phosphate synthase L chain, ATP-binding  54.87 
 
 
676 aa  723    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1223  carbamoyl-phosphate synthase L chain, ATP-binding  54.45 
 
 
668 aa  688    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.116496  normal 
 
 
-
 
NC_010531  Pnec_0929  acetyl-CoA carboxylase, biotin carboxylase  69.14 
 
 
678 aa  909    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3163  carbamoyl-phosphate synthase L chain ATP-binding  51.74 
 
 
669 aa  644    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3403  carbamoyl-phosphate synthase L chain, ATP-binding  78.59 
 
 
696 aa  1090    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1020  carbamoyl-phosphate synthase L chain, ATP-binding  55.05 
 
 
670 aa  682    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1748  carbamoyl-phosphate synthase L chain, ATP-binding  51.24 
 
 
669 aa  637    Maricaulis maris MCS10  Bacteria  normal  normal  0.0501395 
 
 
-
 
NC_007799  ECH_0487  propionyl-CoA carboxylase, alpha subunit  44.88 
 
 
655 aa  567  1e-160  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0539  carbamoyl-phosphate synthase subunit L  43.36 
 
 
656 aa  548  1e-154  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0433  propionyl-CoA carboxylase, alpha subunit  43.58 
 
 
691 aa  539  9.999999999999999e-153  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2426  pyruvate carboxylase subunit A  55.07 
 
 
498 aa  514  1e-144  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  45.7 
 
 
667 aa  514  1e-144  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  52.88 
 
 
681 aa  502  1e-141  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_0794  pyruvate carboxylase subunit A  52.98 
 
 
499 aa  502  1e-141  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013159  Svir_30510  acetyl/propionyl-CoA carboxylase, alpha subunit  41.9 
 
 
665 aa  502  1e-140  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.434229 
 
 
-
 
NC_012793  GWCH70_1840  acetyl-CoA carboxylase biotin carboxylase subunit  55.51 
 
 
450 aa  496  1e-139  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  42.11 
 
 
700 aa  492  9.999999999999999e-139  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2248  carbamoyl-phosphate synthase L chain, ATP-binding  42.9 
 
 
697 aa  493  9.999999999999999e-139  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1792  hypothetical protein  41.02 
 
 
654 aa  489  1e-137  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  45.33 
 
 
674 aa  490  1e-137  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.11 
 
 
663 aa  490  1e-137  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  42.75 
 
 
676 aa  492  1e-137  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  58.31 
 
 
666 aa  486  1e-136  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A1587  pyruvate carboxylase subunit A  54.19 
 
 
493 aa  486  1e-136  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.482835  normal 
 
 
-
 
NC_009253  Dred_1065  acetyl-CoA carboxylase, biotin carboxylase  52.55 
 
 
448 aa  487  1e-136  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000015139  n/a   
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  41.01 
 
 
686 aa  488  1e-136  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  43.8 
 
 
668 aa  487  1e-136  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  45.04 
 
 
674 aa  488  1e-136  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  45.04 
 
 
670 aa  485  1e-136  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1330  biotin carboxylase  52.76 
 
 
450 aa  487  1e-136  Clostridium perfringens ATCC 13124  Bacteria  normal  0.110038  n/a   
 
 
-
 
NC_008262  CPR_1142  biotin carboxylase  52.98 
 
 
450 aa  487  1e-136  Clostridium perfringens SM101  Bacteria  normal  0.123284  n/a   
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  43.02 
 
 
660 aa  483  1e-135  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  56.89 
 
 
679 aa  484  1e-135  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_002939  GSU2019  acetyl-CoA carboxylase, biotin carboxylase  52.55 
 
 
446 aa  481  1e-134  Geobacter sulfurreducens PCA  Bacteria  normal  0.274625  n/a   
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  55.91 
 
 
712 aa  479  1e-134  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_11348  biotin carboxylase (accC)  51.23 
 
 
480 aa  480  1e-134  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0917166  n/a   
 
 
-
 
NC_009674  Bcer98_2877  acetyl-CoA carboxylase biotin carboxylase subunit  54.07 
 
 
450 aa  479  1e-134  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0201328  n/a   
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  44.29 
 
 
673 aa  479  1e-134  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  45.1 
 
 
662 aa  480  1e-134  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_013411  GYMC61_2441  acetyl-CoA carboxylase biotin carboxylase subunit  54.07 
 
 
450 aa  481  1e-134  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008726  Mvan_4090  carbamoyl-phosphate synthase L chain, ATP-binding  43.17 
 
 
660 aa  480  1e-134  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.734303  normal 
 
 
-
 
NC_011726  PCC8801_1426  acetyl-CoA carboxylase biotin carboxylase subunit  52.98 
 
 
449 aa  479  1e-134  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_1826  acetyl-CoA carboxylase, biotin carboxylase  52.77 
 
 
446 aa  479  1e-134  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136846  n/a   
 
 
-
 
NC_013161  Cyan8802_1455  acetyl-CoA carboxylase biotin carboxylase subunit  53.2 
 
 
449 aa  481  1e-134  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0319  carbamoyl-phosphate synthase L chain, ATP-binding  53.3 
 
 
689 aa  479  1e-134  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2831  carbamoyl-phosphate synthase L chain ATP-binding  42 
 
 
680 aa  477  1e-133  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1342  pyruvate carboxylase subunit A  50.88 
 
 
494 aa  476  1e-133  Methanococcus maripaludis C7  Archaea  normal  0.492096  normal  0.0929613 
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  55.32 
 
 
672 aa  478  1e-133  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_008700  Sama_1359  3-methylcrotonyl-CoA carboxylase alpha subunit  42.63 
 
 
673 aa  475  1e-133  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.812437 
 
 
-
 
NC_008321  Shewmr4_2325  3-methylcrotonoyl-CoA carboxylase, alpha subunit  41.27 
 
 
679 aa  476  1e-133  Shewanella sp. MR-4  Bacteria  normal  normal  0.676879 
 
 
-
 
NC_008322  Shewmr7_2397  3-methylcrotonoyl-CoA carboxylase, alpha subunit  41.13 
 
 
679 aa  476  1e-133  Shewanella sp. MR-7  Bacteria  normal  0.63603  normal  0.616301 
 
 
-
 
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