More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_0117 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0103  cytochrome c oxidase, subunit II  99.2 
 
 
375 aa  773    Pseudomonas putida KT2440  Bacteria  normal  normal  0.193198 
 
 
-
 
NC_007492  Pfl01_0079  cytochrome c oxidase, subunit II  86.93 
 
 
375 aa  692    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0117  cytochrome c oxidase, subunit II  100 
 
 
375 aa  776    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0102376 
 
 
-
 
NC_009512  Pput_0119  cytochrome c oxidase, subunit II  98.4 
 
 
375 aa  766    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0122  cytochrome c oxidase, subunit II  95.2 
 
 
375 aa  745    Pseudomonas putida W619  Bacteria  normal  normal  0.946881 
 
 
-
 
NC_008463  PA14_01290  cytochrome c oxidase, subunit II  80.16 
 
 
374 aa  653    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.46157  normal 
 
 
-
 
NC_009656  PSPA7_0180  cytochrome c oxidase subunit II  79.18 
 
 
366 aa  631  1e-180  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0142  cytochrome c oxidase, subunit II  76.68 
 
 
374 aa  609  1e-173  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_01020  cytochrome c oxidase, subunit II  72.92 
 
 
385 aa  573  1.0000000000000001e-162  Azotobacter vinelandii DJ  Bacteria  normal  0.24737  n/a   
 
 
-
 
NC_008740  Maqu_0062  cytochrome c oxidase, subunit II  65.34 
 
 
374 aa  504  1e-141  Marinobacter aquaeolei VT8  Bacteria  normal  0.0885746  n/a