Gene Pnec_1645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1645 
Symbol 
ID6182957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1444057 
End bp1445214 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content47% 
IMG OID641672163 
Productcytochrome c oxidase, subunit II 
Protein accessionYP_001798333 
Protein GI171464220 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR02866] cytochrome c oxidase, subunit II 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.856042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.904416 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTAT TTGGAAAAGT CACTAGGGCT TTGCTCTATT TCGCAGTAGC TTTTGGCGCT 
GCTTTTGCTC ATGCAGCAGA GAATATGCCT GGTGGCCCAG CTGTTAATCA GCTGAATTTC
GCGCCCGCTG CTACCAAAAT CATGCAAGAG ATCCACTGGT TGCATTGGAT GATGTTGGCA
ATTTGCGCGT TGATTTTTGT GGGCGTTTTT GGAGTGATGT TCTATTCCAT CTTGAAGCAC
CGCAAATCAT TAGGTCATAA ATCAGCCTCA TTCCACGAGA GCACCACTGT TGAAATTATT
TGGACAGTTA TTCCATTGCT CATCGTGATT GGTATGGCAT TGCCTGCAAC AAAAACAGTT
GTAGCAATGA AAGACACCAC AAACTCCGAC ATTACTATTA AGACTACTGG TTACCAGTGG
AAGTGGGGTT ACGACTACAT TAAAGGTGAG GGCGAGGGCA TTAGCTTCCT CTCAACGATG
TCTACTTCAC GTGAAGCTAT CAATAACCTC GCGCCAAAAT CAAATACTTA TTTGATGGAA
GTGGATAACG AAATGGTTGT GCCTGTTGGC AAGAAGATTC GTTTGATCAC TACTGCTAAC
GACGTGATTC ATGCTTGGAC TATTCCAGCG TTTGGCGTTA AGCAAGACGC GATTCCAGGT
TTTGTTCGTG ACACTTGGTT TAGAGCTGAA AAGATCGGCA CATTCCGCGG TCAGTGTTCT
GAGCTCTGCG GCGCCGAGCA TGCCTTTATG CCCATCGTTG TGAGAGTGGT TTCTCAAGAG
GACTACAGCA AGTGGGTCGA AGAGGAGAAG AAAGAAATGG GTGCTGGCGG CGATGATCCA
TCTAAGGTTT ACACATTAGA TGAGCAAAAA GAGCGCGGCG CTAAAGTGTA TGCAGCGAAC
TGCGCAGCTT GTCACCAGCC AAACGGAAAA GGTGCGGGCG CATTCCAAGC GTTAGACGGT
AGCAAAGTTG TTTTAGGCCC TAAAGCTGGT CAGTTCAACA TTCTTATTAA TGGTAAGGGC
GCGATGCCGA AGTGGGCTGG TGTGATTTCT GATGGCGATA TCGCTGCGGT CATGACCTAT
ACACGTAACG CATGGGGTAA TAAGACGAGT GAAGTGATTC AGACCCAAGA GATTATTACT
GCACGCGGCG GCAAATAA
 
Protein sequence
MNLFGKVTRA LLYFAVAFGA AFAHAAENMP GGPAVNQLNF APAATKIMQE IHWLHWMMLA 
ICALIFVGVF GVMFYSILKH RKSLGHKSAS FHESTTVEII WTVIPLLIVI GMALPATKTV
VAMKDTTNSD ITIKTTGYQW KWGYDYIKGE GEGISFLSTM STSREAINNL APKSNTYLME
VDNEMVVPVG KKIRLITTAN DVIHAWTIPA FGVKQDAIPG FVRDTWFRAE KIGTFRGQCS
ELCGAEHAFM PIVVRVVSQE DYSKWVEEEK KEMGAGGDDP SKVYTLDEQK ERGAKVYAAN
CAACHQPNGK GAGAFQALDG SKVVLGPKAG QFNILINGKG AMPKWAGVIS DGDIAAVMTY
TRNAWGNKTS EVIQTQEIIT ARGGK