| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0198 |
|---|
| Symbol | |
|---|
| ID | 5612484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 224528 |
|---|
| End bp | 226102 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931024 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_001471939 |
|---|
| Protein GI | 157373339 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCAAA AGTTGTATGG TTTGCCGGCG TTATTATTTT CGCCTTCTAT CTTAGCTGCG
GATATGCCCC TGAACATGAC TCAAGGGGTA ACAGAGATTA GTGGGCGGGT GTACAACCTG
CACATGATCA TTCTGTACAT CTGTTGCGCT ATCGGTATTC TGGTGTTTGG CGTGATGATC
TACTCGATGA TCAACCATCG CAAATCCAGA GGTGCGGTAG CTGCTAACTT CCACGAAAGT
ACTAAAGTCG AGATAGCCTG GACGCTCGTT CCTTTCATCA TTCTCGTTCT TATGGCTATT
CCTGCGACCA AGACCTTAAT CGCAATGGAA GACCCTTCAG ATGCCGATCT GACAATCAAA
ATCACCGGTT CTCAGTGGAA GTGGCATTAC AGCTATTTCG ATCACGATCT CGAATTTTAC
AGCTTGCTCT CAACCCCAAG AGAACAGATA GAGGGTACTG AAGTAAAAGG CGAAAACTAC
CTCCTCGAAG TCGACAAACC TTTAGTTCTC CCGGTAAACA AGAAAGTCAG ATTTTTAATG
ACCTCCGACG ATGTCATCCA CTCCTGGTGG GTGCCAGCGT TTGCAGTGAA AAAAGATGCC
AATCCGGGTT TTATCAATGA GGCCTGGACA CGGATTGATA AGCCCGGTGT TTACCGCGGT
CAATGTGCCG AACTTTGCGG CAAAGACCAC GGGTTTATGC CGATCGTTGT CGAAGCTCTT
TCAGAAGTAG ACTTTGATAA GTGGGTGATT GCTCAGAAGC AGCAAGCGAA CAATGCAGAA
GCTGAAGCGA AAGCCGCACT TTCGAAAACG TTGAGCATGG AAGAACTCAT GGCTAAAGGC
GAGCAAATCT ACCTAGCTCG ATGTGCCGCT TGTCATCAAC CTAATGGCGC TGGTCTACCC
GGTGTATTCC CTTCTCTTAT TGGTAGCCCC ATAACCATAG GCCCTGTCGC GGCTCATGTC
GATATCGTCG TCAATGGTAA ACCAGGAACG GCTATGCAAG CTTTTGCTAA GCAACTAAAT
GCTACTGAAA TTGCTGCGGT AGTGACTTTT GAGCGTAATG CTTGGGGCAA TGACTCTGGT
GATACTGTCC AAGCAGCTGA TGTCAGCTCT GGTGGTTCGA GTTCTGCAGC CTCCAACGAT
TCAAGCACCG CAATCCCTGC CACTTTACCA GCAAGCCAGC CTGAGACTGA GCAAGTTAAA
ACGGCTGTGG CTGAAACGGC AAGCAAAGTT GTTGAGGAAG TTGAAGCGGT TGTTTTAGAT
GACTTAACGA TGGATGAACT TATGGCCGTG GGTGAGAAGG TCTACATGAC TCATTGTGTT
GCTTGTCACC AGGCTGCAGG TACCGGATTA CCCGGCGCTT TCCCTTCATT AGTCGGCAGC
CCAGTGATCA CAGGACCAAT AAGCGGTCAT CTCGATGTTG TCATCAATGG TAAACCGGGT
ACTGCAATGC AGTCATTTAG CTCACTACTC ACGCCACAAC AGTTAGCTGC GGTGGTGACT
TATGAGCGCA ATGCATGGGG TAATAACTCC GGTGATACCG TTCAGGCTTC TGACGTTGTT
GGTCACGGAA ATTAA
|
|---|
| Protein sequence | MKQKLYGLPA LLFSPSILAA DMPLNMTQGV TEISGRVYNL HMIILYICCA IGILVFGVMI
YSMINHRKSR GAVAANFHES TKVEIAWTLV PFIILVLMAI PATKTLIAME DPSDADLTIK
ITGSQWKWHY SYFDHDLEFY SLLSTPREQI EGTEVKGENY LLEVDKPLVL PVNKKVRFLM
TSDDVIHSWW VPAFAVKKDA NPGFINEAWT RIDKPGVYRG QCAELCGKDH GFMPIVVEAL
SEVDFDKWVI AQKQQANNAE AEAKAALSKT LSMEELMAKG EQIYLARCAA CHQPNGAGLP
GVFPSLIGSP ITIGPVAAHV DIVVNGKPGT AMQAFAKQLN ATEIAAVVTF ERNAWGNDSG
DTVQAADVSS GGSSSAASND SSTAIPATLP ASQPETEQVK TAVAETASKV VEEVEAVVLD
DLTMDELMAV GEKVYMTHCV ACHQAAGTGL PGAFPSLVGS PVITGPISGH LDVVINGKPG
TAMQSFSSLL TPQQLAAVVT YERNAWGNNS GDTVQASDVV GHGN
|
|---|
| |