More than 300 homologs were found in PanDaTox collection
for query gene Pden_1134 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_1134  short-chain dehydrogenase/reductase SDR  100 
 
 
285 aa  584  1e-166  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  67.02 
 
 
285 aa  404  1.0000000000000001e-112  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_011004  Rpal_2362  short-chain dehydrogenase/reductase SDR  68.09 
 
 
286 aa  404  1.0000000000000001e-112  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.453828  n/a   
 
 
-
 
NC_012858  Rleg_6701  short-chain dehydrogenase/reductase SDR  68.77 
 
 
285 aa  405  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.539155  normal  0.142405 
 
 
-
 
NC_011366  Rleg2_5800  short-chain dehydrogenase/reductase SDR  68.77 
 
 
285 aa  406  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0775551 
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  67.25 
 
 
286 aa  401  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  66.67 
 
 
285 aa  401  1e-111  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  67.02 
 
 
285 aa  403  1e-111  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_007925  RPC_1231  short-chain dehydrogenase/reductase SDR  68.07 
 
 
285 aa  400  9.999999999999999e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000245222 
 
 
-
 
NC_009620  Smed_4064  short-chain dehydrogenase/reductase SDR  67.72 
 
 
285 aa  400  9.999999999999999e-111  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5588  dehydrogenase  67.72 
 
 
285 aa  399  9.999999999999999e-111  Agrobacterium vitis S4  Bacteria  normal  0.861783  n/a   
 
 
-
 
NC_009428  Rsph17025_2997  short-chain dehydrogenase/reductase SDR  67.02 
 
 
285 aa  395  1e-109  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.402229  normal  0.230445 
 
 
-
 
NC_007493  RSP_0919  Short-chain dehydrogenase/reductase SDR  65.26 
 
 
285 aa  391  1e-108  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2578  short-chain dehydrogenase/reductase SDR  65.61 
 
 
285 aa  392  1e-108  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.319892  normal  0.963036 
 
 
-
 
NC_007406  Nwi_2662  short-chain dehydrogenase/reductase SDR  65.49 
 
 
286 aa  390  1e-107  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.392241  normal 
 
 
-
 
NC_010505  Mrad2831_2460  short-chain dehydrogenase/reductase SDR  65.51 
 
 
286 aa  385  1e-106  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.239121  normal 
 
 
-
 
NC_010581  Bind_2992  short-chain dehydrogenase/reductase SDR  65.61 
 
 
285 aa  382  1e-105  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1379  short-chain dehydrogenase/reductase SDR  63.99 
 
 
286 aa  378  1e-104  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.268463  n/a   
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  63.16 
 
 
288 aa  377  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_007492  Pfl01_2695  Short-chain dehydrogenase/reductase SDR  63.51 
 
 
285 aa  371  1e-102  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00727931 
 
 
-
 
NC_010322  PputGB1_3001  short-chain dehydrogenase/reductase SDR  62.11 
 
 
285 aa  373  1e-102  Pseudomonas putida GB-1  Bacteria  normal  0.798039  normal 
 
 
-
 
NC_002947  PP_2723  short chain dehydrogenase/reductase family oxidoreductase  61.75 
 
 
285 aa  369  1e-101  Pseudomonas putida KT2440  Bacteria  normal  0.612253  normal 
 
 
-
 
NC_010511  M446_0844  short-chain dehydrogenase/reductase SDR  62.94 
 
 
286 aa  370  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2025  short-chain dehydrogenase/reductase SDR  62.81 
 
 
288 aa  369  1e-101  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.000209901 
 
 
-
 
NC_010501  PputW619_2859  short-chain dehydrogenase/reductase SDR  64.91 
 
 
285 aa  368  1e-101  Pseudomonas putida W619  Bacteria  normal  0.170147  normal  0.262214 
 
 
-
 
NC_009668  Oant_4304  short-chain dehydrogenase/reductase SDR  63.03 
 
 
311 aa  367  1e-100  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3031  short-chain dehydrogenase/reductase SDR  61.4 
 
 
285 aa  367  1e-100  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2411  Short-chain dehydrogenase/reductase SDR  60.78 
 
 
286 aa  363  1e-99  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4750  short-chain dehydrogenase/reductase SDR  60.78 
 
 
288 aa  358  6e-98  Burkholderia phymatum STM815  Bacteria  normal  0.306467  normal  0.765133 
 
 
-
 
NC_004578  PSPTO_2677  oxidoreductase, short chain dehydrogenase/reductase family  59.36 
 
 
286 aa  355  5.999999999999999e-97  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.822958  n/a   
 
 
-
 
NC_014210  Ndas_1784  short-chain dehydrogenase/reductase SDR  62.69 
 
 
280 aa  344  1e-93  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.348942  normal  0.531836 
 
 
-
 
NC_008752  Aave_4486  short-chain dehydrogenase/reductase SDR  59.86 
 
 
292 aa  343  2.9999999999999997e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0684702 
 
 
-
 
NC_013757  Gobs_3064  short-chain dehydrogenase/reductase SDR  60.14 
 
 
285 aa  339  4e-92  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.638488  n/a   
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  59.03 
 
 
288 aa  336  1.9999999999999998e-91  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  56.43 
 
 
293 aa  332  4e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_013061  Phep_2635  short-chain dehydrogenase/reductase SDR  59.57 
 
 
298 aa  327  1.0000000000000001e-88  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.795136 
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  57.19 
 
 
300 aa  325  5e-88  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_010725  Mpop_4720  short-chain dehydrogenase/reductase SDR  55.24 
 
 
290 aa  320  1.9999999999999998e-86  Methylobacterium populi BJ001  Bacteria  normal  decreased coverage  0.00355451 
 
 
-
 
NC_011757  Mchl_4573  short-chain dehydrogenase/reductase SDR  55.24 
 
 
290 aa  319  3e-86  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0102101 
 
 
-
 
NC_010505  Mrad2831_3745  short-chain dehydrogenase/reductase SDR  56.54 
 
 
292 aa  317  1e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.082877 
 
 
-
 
NC_010172  Mext_4203  short-chain dehydrogenase/reductase SDR  54.9 
 
 
290 aa  317  1e-85  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.424888 
 
 
-
 
NC_010505  Mrad2831_1999  short-chain dehydrogenase/reductase SDR  53.15 
 
 
291 aa  311  6.999999999999999e-84  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.791141  normal  0.178884 
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  53.21 
 
 
295 aa  309  2.9999999999999997e-83  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_011891  A2cp1_3000  short-chain dehydrogenase/reductase SDR  52.86 
 
 
295 aa  306  3e-82  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.546475  n/a   
 
 
-
 
NC_013093  Amir_3986  short-chain dehydrogenase/reductase SDR  57.04 
 
 
297 aa  301  7.000000000000001e-81  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  52.14 
 
 
295 aa  301  8.000000000000001e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1963  short-chain dehydrogenase/reductase SDR  54.9 
 
 
284 aa  300  2e-80  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.757824  normal  0.126466 
 
 
-
 
NC_009664  Krad_0060  short-chain dehydrogenase/reductase SDR  56.23 
 
 
293 aa  300  2e-80  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.116516  normal  0.834143 
 
 
-
 
NC_013172  Bfae_19840  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  54.39 
 
 
297 aa  299  3e-80  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  56.16 
 
 
297 aa  299  3e-80  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4753  short-chain dehydrogenase/reductase SDR  55.27 
 
 
284 aa  300  3e-80  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163262  normal  0.97721 
 
 
-
 
NC_007348  Reut_B4376  Short-chain dehydrogenase/reductase SDR  51.99 
 
 
285 aa  298  5e-80  Ralstonia eutropha JMP134  Bacteria  normal  0.896027  n/a   
 
 
-
 
NC_008463  PA14_36870  putative short-chain dehydrogenase  52.71 
 
 
286 aa  296  2e-79  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0632  short chain dehydrogenase  53.11 
 
 
288 aa  296  3e-79  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.000000680928  n/a   
 
 
-
 
NC_008541  Arth_0126  short-chain dehydrogenase/reductase SDR  54.45 
 
 
298 aa  295  6e-79  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0243  short-chain dehydrogenase/reductase SDR  53.05 
 
 
304 aa  295  6e-79  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013159  Svir_27180  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  53.48 
 
 
281 aa  294  1e-78  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3237  short-chain dehydrogenase/reductase SDR  55.12 
 
 
308 aa  293  3e-78  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.278854  normal  0.143787 
 
 
-
 
NC_011146  Gbem_0138  short-chain dehydrogenase/reductase SDR  52.75 
 
 
286 aa  293  3e-78  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6190  short-chain dehydrogenase/reductase SDR  53.9 
 
 
335 aa  291  8e-78  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2428  Short-chain dehydrogenase/reductase SDR  53.31 
 
 
285 aa  291  1e-77  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00441007 
 
 
-
 
NC_009664  Krad_2810  short-chain dehydrogenase/reductase SDR  53 
 
 
298 aa  291  1e-77  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_11090  Short-chain dehydrogenase/reductase  50.89 
 
 
286 aa  289  4e-77  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  50.74 
 
 
287 aa  288  7e-77  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0121  short-chain dehydrogenase/reductase SDR  51.65 
 
 
286 aa  287  1e-76  Geobacter sp. M21  Bacteria  n/a    normal  0.984934 
 
 
-
 
NC_009972  Haur_2365  short-chain dehydrogenase/reductase SDR  52.71 
 
 
288 aa  287  2e-76  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000784864  n/a   
 
 
-
 
NC_013037  Dfer_2307  short-chain dehydrogenase/reductase SDR  51.94 
 
 
292 aa  286  2.9999999999999996e-76  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.381228  normal 
 
 
-
 
NC_011729  PCC7424_1059  short-chain dehydrogenase/reductase SDR  51.06 
 
 
284 aa  286  4e-76  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.102631 
 
 
-
 
NC_005945  BAS0712  short chain dehydrogenase  52.69 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus anthracis str. Sterne  Bacteria  normal  0.712851  n/a   
 
 
-
 
NC_005957  BT9727_0663  short chain dehydrogenase  52.69 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0748  short chain dehydrogenase  52.69 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4525  short chain dehydrogenase  51.92 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus cereus G9842  Bacteria  normal  normal  0.193288 
 
 
-
 
NC_010087  Bmul_5540  short-chain dehydrogenase/reductase SDR  52.5 
 
 
333 aa  284  1.0000000000000001e-75  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.752467  normal  0.0103168 
 
 
-
 
NC_011773  BCAH820_0824  short chain dehydrogenase  52.69 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.87827e-53 
 
 
-
 
NC_010184  BcerKBAB4_0667  short chain dehydrogenase  51.54 
 
 
288 aa  284  1.0000000000000001e-75  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.401827  n/a   
 
 
-
 
NC_013411  GYMC61_1520  short-chain dehydrogenase/reductase SDR  50.74 
 
 
287 aa  284  1.0000000000000001e-75  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_0818  short chain dehydrogenase  51.92 
 
 
288 aa  283  2.0000000000000002e-75  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1210  short-chain dehydrogenase/reductase SDR  51.96 
 
 
337 aa  283  3.0000000000000004e-75  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0655  short chain dehydrogenase  52.31 
 
 
288 aa  283  3.0000000000000004e-75  Bacillus cereus E33L  Bacteria  hitchhiker  0.000332724  n/a   
 
 
-
 
NC_011658  BCAH187_A0912  short chain dehydrogenase  51.54 
 
 
288 aa  282  4.0000000000000003e-75  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0756  twin-arginine translocation pathway signal  51.6 
 
 
328 aa  281  8.000000000000001e-75  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.98283  n/a   
 
 
-
 
NC_008542  Bcen2424_1237  short-chain dehydrogenase/reductase SDR  51.6 
 
 
328 aa  281  8.000000000000001e-75  Burkholderia cenocepacia HI2424  Bacteria  normal  0.688283  n/a   
 
 
-
 
NC_012853  Rleg_5903  short-chain dehydrogenase/reductase SDR  50.71 
 
 
333 aa  281  8.000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.828162  normal 
 
 
-
 
NC_007614  Nmul_A1180  Short-chain dehydrogenase/reductase SDR  50.73 
 
 
293 aa  281  1e-74  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0727781  n/a   
 
 
-
 
NC_011725  BCB4264_A0805  short chain dehydrogenase  51.92 
 
 
288 aa  280  2e-74  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3474  short-chain dehydrogenase/reductase SDR  51.1 
 
 
285 aa  280  2e-74  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.345409 
 
 
-
 
NC_008781  Pnap_2744  short chain dehydrogenase  49.47 
 
 
334 aa  280  2e-74  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.972914  normal  0.0520687 
 
 
-
 
NC_013730  Slin_0453  short-chain dehydrogenase/reductase SDR  49.82 
 
 
284 aa  280  2e-74  Spirosoma linguale DSM 74  Bacteria  normal  0.22798  normal 
 
 
-
 
NC_007484  Noc_0460  short chain dehydrogenase  49.46 
 
 
291 aa  278  5e-74  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5249  short chain dehydrogenase  50.18 
 
 
318 aa  279  5e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.109132  normal 
 
 
-
 
NC_013132  Cpin_3131  short-chain dehydrogenase/reductase SDR  50.53 
 
 
340 aa  278  7e-74  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.395332  normal  0.413116 
 
 
-
 
NC_009621  Smed_5297  short chain dehydrogenase  50.54 
 
 
317 aa  278  8e-74  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.460339 
 
 
-
 
NC_007963  Csal_0064  short-chain dehydrogenase/reductase SDR  49.82 
 
 
284 aa  277  1e-73  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1368  short-chain dehydrogenase/reductase SDR  51.52 
 
 
285 aa  277  1e-73  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.00277313  n/a   
 
 
-
 
NC_010512  Bcenmc03_6053  short-chain dehydrogenase/reductase SDR  51.52 
 
 
285 aa  277  1e-73  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0516293 
 
 
-
 
NC_008544  Bcen2424_6461  short-chain dehydrogenase/reductase SDR  51.52 
 
 
285 aa  277  1e-73  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0261  short-chain dehydrogenase/reductase SDR  51.35 
 
 
285 aa  276  2e-73  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.566144  normal 
 
 
-
 
NC_008228  Patl_0912  short-chain dehydrogenase/reductase SDR  51.14 
 
 
299 aa  276  2e-73  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2584  short chain dehydrogenase/reductase family oxidoreductase  51.99 
 
 
292 aa  276  2e-73  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1306  short-chain dehydrogenase/reductase SDR  53.58 
 
 
285 aa  276  2e-73  Mycobacterium sp. JLS  Bacteria  normal  0.603842  normal 
 
 
-
 
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