More than 300 homologs were found in PanDaTox collection
for query gene RPC_1231 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_1231  short-chain dehydrogenase/reductase SDR  100 
 
 
285 aa  586  1e-166  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000245222 
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  83.33 
 
 
286 aa  492  9.999999999999999e-139  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_011004  Rpal_2362  short-chain dehydrogenase/reductase SDR  83.33 
 
 
286 aa  491  9.999999999999999e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.453828  n/a   
 
 
-
 
NC_007406  Nwi_2662  short-chain dehydrogenase/reductase SDR  78.72 
 
 
286 aa  481  1e-135  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.392241  normal 
 
 
-
 
NC_012858  Rleg_6701  short-chain dehydrogenase/reductase SDR  79.3 
 
 
285 aa  474  1e-132  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.539155  normal  0.142405 
 
 
-
 
NC_011366  Rleg2_5800  short-chain dehydrogenase/reductase SDR  78.6 
 
 
285 aa  468  1.0000000000000001e-131  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0775551 
 
 
-
 
NC_007493  RSP_0919  Short-chain dehydrogenase/reductase SDR  77.19 
 
 
285 aa  457  9.999999999999999e-129  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4304  short-chain dehydrogenase/reductase SDR  74.56 
 
 
311 aa  459  9.999999999999999e-129  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2578  short-chain dehydrogenase/reductase SDR  77.54 
 
 
285 aa  459  9.999999999999999e-129  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.319892  normal  0.963036 
 
 
-
 
NC_009620  Smed_4064  short-chain dehydrogenase/reductase SDR  74.04 
 
 
285 aa  456  1e-127  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2997  short-chain dehydrogenase/reductase SDR  74.74 
 
 
285 aa  454  1e-127  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.402229  normal  0.230445 
 
 
-
 
NC_011988  Avi_5588  dehydrogenase  76.14 
 
 
285 aa  452  1.0000000000000001e-126  Agrobacterium vitis S4  Bacteria  normal  0.861783  n/a   
 
 
-
 
NC_010581  Bind_2992  short-chain dehydrogenase/reductase SDR  75.89 
 
 
285 aa  445  1.0000000000000001e-124  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  74.04 
 
 
285 aa  441  1e-123  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  73.68 
 
 
285 aa  439  9.999999999999999e-123  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  72.28 
 
 
285 aa  431  1e-120  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_010511  M446_0844  short-chain dehydrogenase/reductase SDR  66.08 
 
 
286 aa  408  1e-113  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1379  short-chain dehydrogenase/reductase SDR  66.78 
 
 
286 aa  410  1e-113  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.268463  n/a   
 
 
-
 
NC_010505  Mrad2831_2460  short-chain dehydrogenase/reductase SDR  66.78 
 
 
286 aa  406  1.0000000000000001e-112  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.239121  normal 
 
 
-
 
NC_008686  Pden_1134  short-chain dehydrogenase/reductase SDR  68.07 
 
 
285 aa  400  9.999999999999999e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  67.02 
 
 
288 aa  393  1e-108  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_010681  Bphyt_2025  short-chain dehydrogenase/reductase SDR  66.67 
 
 
288 aa  393  1e-108  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.000209901 
 
 
-
 
NC_010623  Bphy_4750  short-chain dehydrogenase/reductase SDR  65.26 
 
 
288 aa  390  1e-107  Burkholderia phymatum STM815  Bacteria  normal  0.306467  normal  0.765133 
 
 
-
 
NC_007005  Psyr_2411  Short-chain dehydrogenase/reductase SDR  62.9 
 
 
286 aa  369  1e-101  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2695  Short-chain dehydrogenase/reductase SDR  61.05 
 
 
285 aa  365  1e-100  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00727931 
 
 
-
 
NC_008752  Aave_4486  short-chain dehydrogenase/reductase SDR  62.68 
 
 
292 aa  363  3e-99  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0684702 
 
 
-
 
NC_004578  PSPTO_2677  oxidoreductase, short chain dehydrogenase/reductase family  62.06 
 
 
286 aa  361  6e-99  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.822958  n/a   
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  61.57 
 
 
288 aa  358  5e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  62.59 
 
 
300 aa  356  2.9999999999999997e-97  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_014210  Ndas_1784  short-chain dehydrogenase/reductase SDR  64.55 
 
 
280 aa  354  1e-96  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.348942  normal  0.531836 
 
 
-
 
NC_013061  Phep_2635  short-chain dehydrogenase/reductase SDR  63.25 
 
 
298 aa  353  2e-96  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.795136 
 
 
-
 
NC_010322  PputGB1_3001  short-chain dehydrogenase/reductase SDR  59.65 
 
 
285 aa  351  8.999999999999999e-96  Pseudomonas putida GB-1  Bacteria  normal  0.798039  normal 
 
 
-
 
NC_002947  PP_2723  short chain dehydrogenase/reductase family oxidoreductase  58.25 
 
 
285 aa  344  1e-93  Pseudomonas putida KT2440  Bacteria  normal  0.612253  normal 
 
 
-
 
NC_010501  PputW619_2859  short-chain dehydrogenase/reductase SDR  60.35 
 
 
285 aa  343  2e-93  Pseudomonas putida W619  Bacteria  normal  0.170147  normal  0.262214 
 
 
-
 
NC_009512  Pput_3031  short-chain dehydrogenase/reductase SDR  58.25 
 
 
285 aa  343  2.9999999999999997e-93  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3064  short-chain dehydrogenase/reductase SDR  62.18 
 
 
285 aa  342  2.9999999999999997e-93  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.638488  n/a   
 
 
-
 
NC_010725  Mpop_4720  short-chain dehydrogenase/reductase SDR  57.69 
 
 
290 aa  335  7e-91  Methylobacterium populi BJ001  Bacteria  normal  decreased coverage  0.00355451 
 
 
-
 
NC_009485  BBta_5938  oxidoreductase NAD(P)-binding subunit  84.86 
 
 
206 aa  333  2e-90  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4573  short-chain dehydrogenase/reductase SDR  57.69 
 
 
290 aa  333  2e-90  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0102101 
 
 
-
 
NC_010172  Mext_4203  short-chain dehydrogenase/reductase SDR  57.69 
 
 
290 aa  333  3e-90  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.424888 
 
 
-
 
NC_013093  Amir_3986  short-chain dehydrogenase/reductase SDR  59.15 
 
 
297 aa  332  3e-90  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1999  short-chain dehydrogenase/reductase SDR  56.69 
 
 
291 aa  326  2.0000000000000001e-88  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.791141  normal  0.178884 
 
 
-
 
NC_009664  Krad_0060  short-chain dehydrogenase/reductase SDR  60.66 
 
 
293 aa  326  3e-88  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.116516  normal  0.834143 
 
 
-
 
NC_009664  Krad_2810  short-chain dehydrogenase/reductase SDR  58.1 
 
 
298 aa  323  2e-87  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  59.29 
 
 
297 aa  323  2e-87  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5903  short-chain dehydrogenase/reductase SDR  58.01 
 
 
333 aa  323  2e-87  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.828162  normal 
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  55.36 
 
 
295 aa  319  3e-86  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_011891  A2cp1_3000  short-chain dehydrogenase/reductase SDR  54.29 
 
 
295 aa  313  9.999999999999999e-85  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.546475  n/a   
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  52.5 
 
 
293 aa  313  2.9999999999999996e-84  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  53.93 
 
 
295 aa  311  4.999999999999999e-84  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3745  short-chain dehydrogenase/reductase SDR  54.06 
 
 
292 aa  311  5.999999999999999e-84  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.082877 
 
 
-
 
NC_013132  Cpin_3131  short-chain dehydrogenase/reductase SDR  56.94 
 
 
340 aa  310  2e-83  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.395332  normal  0.413116 
 
 
-
 
NC_013037  Dfer_2307  short-chain dehydrogenase/reductase SDR  55.83 
 
 
292 aa  309  2.9999999999999997e-83  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.381228  normal 
 
 
-
 
NC_013730  Slin_4034  short-chain dehydrogenase/reductase SDR  57.14 
 
 
335 aa  308  8e-83  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000556089  normal 
 
 
-
 
NC_010087  Bmul_5540  short-chain dehydrogenase/reductase SDR  56.43 
 
 
333 aa  307  1.0000000000000001e-82  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.752467  normal  0.0103168 
 
 
-
 
NC_013172  Bfae_19840  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  54.04 
 
 
297 aa  305  6e-82  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2643  short-chain dehydrogenase/reductase SDR  55.63 
 
 
334 aa  304  9.000000000000001e-82  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3237  short-chain dehydrogenase/reductase SDR  55.48 
 
 
308 aa  304  1.0000000000000001e-81  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.278854  normal  0.143787 
 
 
-
 
NC_010512  Bcenmc03_6190  short-chain dehydrogenase/reductase SDR  56.07 
 
 
335 aa  303  2.0000000000000002e-81  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_22650  short-chain alcohol dehydrogenase like protein  58.09 
 
 
306 aa  303  2.0000000000000002e-81  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1292  Short-chain dehydrogenase/reductase SDR  55.16 
 
 
339 aa  298  8e-80  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2428  Short-chain dehydrogenase/reductase SDR  54.51 
 
 
285 aa  297  1e-79  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00441007 
 
 
-
 
NC_010508  Bcenmc03_1210  short-chain dehydrogenase/reductase SDR  55.71 
 
 
337 aa  296  2e-79  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0756  twin-arginine translocation pathway signal  55.71 
 
 
328 aa  297  2e-79  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.98283  n/a   
 
 
-
 
NC_008542  Bcen2424_1237  short-chain dehydrogenase/reductase SDR  55.71 
 
 
328 aa  297  2e-79  Burkholderia cenocepacia HI2424  Bacteria  normal  0.688283  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0667  short chain dehydrogenase  52.94 
 
 
288 aa  296  3e-79  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.401827  n/a   
 
 
-
 
NC_011725  BCB4264_A0805  short chain dehydrogenase  53.31 
 
 
288 aa  293  2e-78  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4525  short chain dehydrogenase  53.31 
 
 
288 aa  293  2e-78  Bacillus cereus G9842  Bacteria  normal  normal  0.193288 
 
 
-
 
NC_012803  Mlut_06640  short-chain alcohol dehydrogenase like protein  55.83 
 
 
309 aa  291  6e-78  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0818  short chain dehydrogenase  52.94 
 
 
288 aa  291  7e-78  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0712  short chain dehydrogenase  53.31 
 
 
288 aa  291  7e-78  Bacillus anthracis str. Sterne  Bacteria  normal  0.712851  n/a   
 
 
-
 
NC_005957  BT9727_0663  short chain dehydrogenase  53.31 
 
 
288 aa  291  7e-78  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0748  short chain dehydrogenase  53.31 
 
 
288 aa  291  7e-78  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0824  short chain dehydrogenase  53.31 
 
 
288 aa  291  7e-78  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.87827e-53 
 
 
-
 
NC_011658  BCAH187_A0912  short chain dehydrogenase  52.94 
 
 
288 aa  291  7e-78  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0632  short chain dehydrogenase  53.58 
 
 
288 aa  291  9e-78  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.000000680928  n/a   
 
 
-
 
NC_006274  BCZK0655  short chain dehydrogenase  52.94 
 
 
288 aa  290  2e-77  Bacillus cereus E33L  Bacteria  hitchhiker  0.000332724  n/a   
 
 
-
 
NC_013521  Sked_17140  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  54.29 
 
 
307 aa  290  2e-77  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.391545  normal 
 
 
-
 
NC_009485  BBta_3897  oxidoreductase NAD(P)-binding subunit  53.74 
 
 
294 aa  289  4e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3415  oxidoreductase  52.48 
 
 
298 aa  287  1e-76  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1246  short-chain dehydrogenase/reductase SDR  56.07 
 
 
335 aa  287  2e-76  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.927114  n/a   
 
 
-
 
NC_011729  PCC7424_1059  short-chain dehydrogenase/reductase SDR  52.17 
 
 
284 aa  286  2e-76  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.102631 
 
 
-
 
NC_008544  Bcen2424_6586  short-chain dehydrogenase/reductase SDR  56.07 
 
 
335 aa  287  2e-76  Burkholderia cenocepacia HI2424  Bacteria  normal  0.830153  normal 
 
 
-
 
NC_012560  Avin_11090  Short-chain dehydrogenase/reductase  52.83 
 
 
286 aa  286  2e-76  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0243  short-chain dehydrogenase/reductase SDR  51.79 
 
 
304 aa  286  2.9999999999999996e-76  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007484  Noc_0460  short chain dehydrogenase  50.54 
 
 
291 aa  284  1.0000000000000001e-75  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1207  short chain dehydrogenase  52.35 
 
 
337 aa  284  1.0000000000000001e-75  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2288  short-chain dehydrogenase/reductase SDR  52.33 
 
 
306 aa  283  2.0000000000000002e-75  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2365  short-chain dehydrogenase/reductase SDR  52.16 
 
 
288 aa  283  2.0000000000000002e-75  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000784864  n/a   
 
 
-
 
NC_008228  Patl_0912  short-chain dehydrogenase/reductase SDR  53.51 
 
 
299 aa  284  2.0000000000000002e-75  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4376  Short-chain dehydrogenase/reductase SDR  51.45 
 
 
285 aa  282  3.0000000000000004e-75  Ralstonia eutropha JMP134  Bacteria  normal  0.896027  n/a   
 
 
-
 
NC_008528  OEOE_0067  Short-chain alcohol dehydrogenase  51.64 
 
 
296 aa  283  3.0000000000000004e-75  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4753  short-chain dehydrogenase/reductase SDR  52.04 
 
 
284 aa  282  3.0000000000000004e-75  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163262  normal  0.97721 
 
 
-
 
NC_009338  Mflv_1963  short-chain dehydrogenase/reductase SDR  52.42 
 
 
284 aa  283  3.0000000000000004e-75  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.757824  normal  0.126466 
 
 
-
 
NC_008541  Arth_0126  short-chain dehydrogenase/reductase SDR  52.5 
 
 
298 aa  282  5.000000000000001e-75  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  50.75 
 
 
287 aa  281  6.000000000000001e-75  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5297  short chain dehydrogenase  50 
 
 
317 aa  281  7.000000000000001e-75  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.460339 
 
 
-
 
NC_011884  Cyan7425_3474  short-chain dehydrogenase/reductase SDR  51.26 
 
 
285 aa  281  8.000000000000001e-75  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.345409 
 
 
-
 
NC_008463  PA14_36870  putative short-chain dehydrogenase  52.83 
 
 
286 aa  281  8.000000000000001e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3331  oxidoreductase  53.19 
 
 
294 aa  280  2e-74  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
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