More than 300 homologs were found in PanDaTox collection
for query gene Mnod_1379 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_1379  short-chain dehydrogenase/reductase SDR  100 
 
 
286 aa  588  1e-167  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.268463  n/a   
 
 
-
 
NC_010511  M446_0844  short-chain dehydrogenase/reductase SDR  94.41 
 
 
286 aa  561  1.0000000000000001e-159  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2460  short-chain dehydrogenase/reductase SDR  81.47 
 
 
286 aa  491  9.999999999999999e-139  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.239121  normal 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  77.97 
 
 
285 aa  465  9.999999999999999e-131  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  76.57 
 
 
285 aa  460  9.999999999999999e-129  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  76.57 
 
 
285 aa  460  9.999999999999999e-129  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  75.18 
 
 
288 aa  444  1.0000000000000001e-124  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_009428  Rsph17025_2997  short-chain dehydrogenase/reductase SDR  73.78 
 
 
285 aa  444  1e-123  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.402229  normal  0.230445 
 
 
-
 
NC_011988  Avi_5588  dehydrogenase  72.73 
 
 
285 aa  438  9.999999999999999e-123  Agrobacterium vitis S4  Bacteria  normal  0.861783  n/a   
 
 
-
 
NC_009049  Rsph17029_2578  short-chain dehydrogenase/reductase SDR  73.08 
 
 
285 aa  439  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.319892  normal  0.963036 
 
 
-
 
NC_007493  RSP_0919  Short-chain dehydrogenase/reductase SDR  72.38 
 
 
285 aa  436  1e-121  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6701  short-chain dehydrogenase/reductase SDR  70.28 
 
 
285 aa  432  1e-120  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.539155  normal  0.142405 
 
 
-
 
NC_010681  Bphyt_2025  short-chain dehydrogenase/reductase SDR  73.05 
 
 
288 aa  432  1e-120  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.000209901 
 
 
-
 
NC_011366  Rleg2_5800  short-chain dehydrogenase/reductase SDR  70.28 
 
 
285 aa  428  1e-119  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0775551 
 
 
-
 
NC_009620  Smed_4064  short-chain dehydrogenase/reductase SDR  70.63 
 
 
285 aa  422  1e-117  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2662  short-chain dehydrogenase/reductase SDR  71.13 
 
 
286 aa  421  1e-116  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.392241  normal 
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  69.69 
 
 
286 aa  420  1e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_007925  RPC_1231  short-chain dehydrogenase/reductase SDR  66.78 
 
 
285 aa  410  1e-113  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000245222 
 
 
-
 
NC_010623  Bphy_4750  short-chain dehydrogenase/reductase SDR  67.73 
 
 
288 aa  405  1.0000000000000001e-112  Burkholderia phymatum STM815  Bacteria  normal  0.306467  normal  0.765133 
 
 
-
 
NC_011004  Rpal_2362  short-chain dehydrogenase/reductase SDR  67.14 
 
 
286 aa  404  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.453828  n/a   
 
 
-
 
NC_010581  Bind_2992  short-chain dehydrogenase/reductase SDR  66.43 
 
 
285 aa  398  9.999999999999999e-111  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  68.52 
 
 
300 aa  397  1e-109  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_008752  Aave_4486  short-chain dehydrogenase/reductase SDR  65.37 
 
 
292 aa  395  1e-109  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0684702 
 
 
-
 
NC_009668  Oant_4304  short-chain dehydrogenase/reductase SDR  65.02 
 
 
311 aa  393  1e-108  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2411  Short-chain dehydrogenase/reductase SDR  63.73 
 
 
286 aa  383  1e-105  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2695  Short-chain dehydrogenase/reductase SDR  62.24 
 
 
285 aa  382  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00727931 
 
 
-
 
NC_008686  Pden_1134  short-chain dehydrogenase/reductase SDR  63.99 
 
 
285 aa  378  1e-104  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1784  short-chain dehydrogenase/reductase SDR  67.54 
 
 
280 aa  380  1e-104  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.348942  normal  0.531836 
 
 
-
 
NC_004578  PSPTO_2677  oxidoreductase, short chain dehydrogenase/reductase family  63.03 
 
 
286 aa  377  1e-103  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.822958  n/a   
 
 
-
 
NC_013757  Gobs_3064  short-chain dehydrogenase/reductase SDR  64.89 
 
 
285 aa  375  1e-103  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.638488  n/a   
 
 
-
 
NC_009512  Pput_3031  short-chain dehydrogenase/reductase SDR  60.84 
 
 
285 aa  367  1e-101  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3001  short-chain dehydrogenase/reductase SDR  61.19 
 
 
285 aa  370  1e-101  Pseudomonas putida GB-1  Bacteria  normal  0.798039  normal 
 
 
-
 
NC_002947  PP_2723  short chain dehydrogenase/reductase family oxidoreductase  60.49 
 
 
285 aa  366  1e-100  Pseudomonas putida KT2440  Bacteria  normal  0.612253  normal 
 
 
-
 
NC_013061  Phep_2635  short-chain dehydrogenase/reductase SDR  61.32 
 
 
298 aa  355  2.9999999999999997e-97  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.795136 
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  60.28 
 
 
288 aa  353  1e-96  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  60.85 
 
 
295 aa  345  7e-94  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_013093  Amir_3986  short-chain dehydrogenase/reductase SDR  60.78 
 
 
297 aa  343  2e-93  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2859  short-chain dehydrogenase/reductase SDR  58.04 
 
 
285 aa  343  2.9999999999999997e-93  Pseudomonas putida W619  Bacteria  normal  0.170147  normal  0.262214 
 
 
-
 
NC_011891  A2cp1_3000  short-chain dehydrogenase/reductase SDR  60.14 
 
 
295 aa  340  1e-92  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.546475  n/a   
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  59.79 
 
 
295 aa  339  2.9999999999999998e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2810  short-chain dehydrogenase/reductase SDR  59.29 
 
 
298 aa  339  2.9999999999999998e-92  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  57.65 
 
 
293 aa  333  2e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_010725  Mpop_4720  short-chain dehydrogenase/reductase SDR  55.4 
 
 
290 aa  329  3e-89  Methylobacterium populi BJ001  Bacteria  normal  decreased coverage  0.00355451 
 
 
-
 
NC_009664  Krad_0060  short-chain dehydrogenase/reductase SDR  58.09 
 
 
293 aa  328  9e-89  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.116516  normal  0.834143 
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  58.72 
 
 
297 aa  327  1.0000000000000001e-88  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4573  short-chain dehydrogenase/reductase SDR  55.05 
 
 
290 aa  326  3e-88  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0102101 
 
 
-
 
NC_010172  Mext_4203  short-chain dehydrogenase/reductase SDR  55.05 
 
 
290 aa  325  4.0000000000000003e-88  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.424888 
 
 
-
 
NC_010505  Mrad2831_3745  short-chain dehydrogenase/reductase SDR  55.12 
 
 
292 aa  324  1e-87  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.082877 
 
 
-
 
NC_014151  Cfla_3237  short-chain dehydrogenase/reductase SDR  56.94 
 
 
308 aa  323  2e-87  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.278854  normal  0.143787 
 
 
-
 
NC_010505  Mrad2831_1999  short-chain dehydrogenase/reductase SDR  53.87 
 
 
291 aa  322  5e-87  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.791141  normal  0.178884 
 
 
-
 
NC_007413  Ava_2428  Short-chain dehydrogenase/reductase SDR  55.26 
 
 
285 aa  312  3.9999999999999997e-84  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00441007 
 
 
-
 
NC_013172  Bfae_19840  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  56.14 
 
 
297 aa  311  5.999999999999999e-84  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5540  short-chain dehydrogenase/reductase SDR  56.54 
 
 
333 aa  311  6.999999999999999e-84  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.752467  normal  0.0103168 
 
 
-
 
NC_009972  Haur_2365  short-chain dehydrogenase/reductase SDR  53.96 
 
 
288 aa  311  7.999999999999999e-84  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000784864  n/a   
 
 
-
 
NC_013730  Slin_4034  short-chain dehydrogenase/reductase SDR  54.8 
 
 
335 aa  309  4e-83  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000556089  normal 
 
 
-
 
NC_010512  Bcenmc03_6190  short-chain dehydrogenase/reductase SDR  55.87 
 
 
335 aa  306  3e-82  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5903  short-chain dehydrogenase/reductase SDR  53.02 
 
 
333 aa  305  4.0000000000000004e-82  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.828162  normal 
 
 
-
 
NC_008025  Dgeo_2288  short-chain dehydrogenase/reductase SDR  55.52 
 
 
306 aa  306  4.0000000000000004e-82  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4376  Short-chain dehydrogenase/reductase SDR  53.07 
 
 
285 aa  304  1.0000000000000001e-81  Ralstonia eutropha JMP134  Bacteria  normal  0.896027  n/a   
 
 
-
 
NC_011729  PCC7424_1059  short-chain dehydrogenase/reductase SDR  54.34 
 
 
284 aa  304  1.0000000000000001e-81  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.102631 
 
 
-
 
NC_013132  Cpin_3131  short-chain dehydrogenase/reductase SDR  52.31 
 
 
340 aa  302  3.0000000000000004e-81  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.395332  normal  0.413116 
 
 
-
 
NC_009441  Fjoh_2643  short-chain dehydrogenase/reductase SDR  50.71 
 
 
334 aa  300  2e-80  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1180  Short-chain dehydrogenase/reductase SDR  51.79 
 
 
293 aa  299  3e-80  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0727781  n/a   
 
 
-
 
NC_013521  Sked_17140  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  54.45 
 
 
307 aa  299  4e-80  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.391545  normal 
 
 
-
 
NC_013411  GYMC61_1520  short-chain dehydrogenase/reductase SDR  51.47 
 
 
287 aa  298  7e-80  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008060  Bcen_1246  short-chain dehydrogenase/reductase SDR  56.77 
 
 
335 aa  298  7e-80  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.927114  n/a   
 
 
-
 
NC_008544  Bcen2424_6586  short-chain dehydrogenase/reductase SDR  56.77 
 
 
335 aa  298  7e-80  Burkholderia cenocepacia HI2424  Bacteria  normal  0.830153  normal 
 
 
-
 
NC_009674  Bcer98_0632  short chain dehydrogenase  51.45 
 
 
288 aa  297  1e-79  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.000000680928  n/a   
 
 
-
 
NC_007614  Nmul_A1292  Short-chain dehydrogenase/reductase SDR  51.96 
 
 
339 aa  294  1e-78  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0994  short-chain dehydrogenase/reductase SDR  53.76 
 
 
288 aa  293  2e-78  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1210  short-chain dehydrogenase/reductase SDR  53.02 
 
 
337 aa  293  2e-78  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5938  oxidoreductase NAD(P)-binding subunit  73.51 
 
 
206 aa  293  2e-78  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0756  twin-arginine translocation pathway signal  53.02 
 
 
328 aa  293  2e-78  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.98283  n/a   
 
 
-
 
NC_008542  Bcen2424_1237  short-chain dehydrogenase/reductase SDR  53.02 
 
 
328 aa  293  2e-78  Burkholderia cenocepacia HI2424  Bacteria  normal  0.688283  n/a   
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  51.5 
 
 
287 aa  293  2e-78  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_36870  putative short-chain dehydrogenase  53.21 
 
 
286 aa  293  3e-78  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2307  short-chain dehydrogenase/reductase SDR  52.31 
 
 
292 aa  292  5e-78  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.381228  normal 
 
 
-
 
NC_012803  Mlut_22650  short-chain alcohol dehydrogenase like protein  52.94 
 
 
306 aa  292  5e-78  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4895  short-chain dehydrogenase/reductase SDR  51.93 
 
 
286 aa  291  6e-78  Ralstonia pickettii 12J  Bacteria  normal  normal  0.317832 
 
 
-
 
NC_012857  Rpic12D_3818  short-chain dehydrogenase/reductase SDR  51.93 
 
 
286 aa  291  6e-78  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0912  short-chain dehydrogenase/reductase SDR  51.84 
 
 
299 aa  291  7e-78  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3474  short-chain dehydrogenase/reductase SDR  51.88 
 
 
285 aa  291  9e-78  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.345409 
 
 
-
 
NC_007484  Noc_0460  short chain dehydrogenase  50.36 
 
 
291 aa  291  1e-77  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_11090  Short-chain dehydrogenase/reductase  52.45 
 
 
286 aa  291  1e-77  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0243  short-chain dehydrogenase/reductase SDR  51.97 
 
 
304 aa  291  1e-77  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013037  Dfer_0261  short-chain dehydrogenase/reductase SDR  51.84 
 
 
285 aa  290  2e-77  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.566144  normal 
 
 
-
 
NC_012918  GM21_0121  short-chain dehydrogenase/reductase SDR  53.21 
 
 
286 aa  289  3e-77  Geobacter sp. M21  Bacteria  n/a    normal  0.984934 
 
 
-
 
NC_008146  Mmcs_1277  short-chain dehydrogenase/reductase SDR  53.31 
 
 
285 aa  289  3e-77  Mycobacterium sp. MCS  Bacteria  normal  0.716847  n/a   
 
 
-
 
NC_011146  Gbem_0138  short-chain dehydrogenase/reductase SDR  53.21 
 
 
286 aa  289  3e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1294  short-chain dehydrogenase/reductase SDR  53.31 
 
 
285 aa  289  3e-77  Mycobacterium sp. KMS  Bacteria  normal  normal  0.110576 
 
 
-
 
NC_009485  BBta_3897  oxidoreductase NAD(P)-binding subunit  50.71 
 
 
294 aa  289  4e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2744  short chain dehydrogenase  52.52 
 
 
334 aa  287  1e-76  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.972914  normal  0.0520687 
 
 
-
 
NC_009436  Ent638_3415  oxidoreductase  51.93 
 
 
298 aa  286  2e-76  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3340  oxidoreductase  51.97 
 
 
294 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.461331 
 
 
-
 
NC_011149  SeAg_B3331  oxidoreductase  51.97 
 
 
294 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3506  oxidoreductase  51.97 
 
 
294 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3411  oxidoreductase  51.97 
 
 
294 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0828  short-chain dehydrogenase/reductase SDR  52.19 
 
 
297 aa  286  2.9999999999999996e-76  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3405  oxidoreductase  51.97 
 
 
294 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.441834 
 
 
-
 
NC_009077  Mjls_1306  short-chain dehydrogenase/reductase SDR  52.57 
 
 
285 aa  285  4e-76  Mycobacterium sp. JLS  Bacteria  normal  0.603842  normal 
 
 
-
 
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