| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1231 |
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| Symbol | |
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| ID | 3969108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1347264 |
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| End bp | 1348121 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637924342 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_531113 |
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| Protein GI | 90422743 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000245222 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCATT ATCCGAAGCC GCCGTTCGCG TCGCAAGCGC AGCCGATGCC GGGTTCGACC
GACGCGATGA CGCCGCGGCC CGATCACGGC GAGGACAGCT ACAAGGGATC CGGGCGACTG
GCTGGCATGA AGGCGGTGAT TACCGGCGGC GACAGCGGCA TCGGCCGCGC CGTGGCGATC
GCCTATGCCC GCGAAGGCGC CGACATCCTG ATCTCCTATC TCGACGAGAA CGAGGAAGCG
GCCGAGGTCA AGGAGTTGAT CGAACGGGAA GGCCGCAAGG CGGTTCTGGT GCCGGGCGAC
CTGCAGTGGC CGGAGCATTG CCGTCGGGTG GTCCAGCGCG CCGCCGAGGA GCTGGGCGGC
ATCGATATCC TGGTCAACAA CGCCGCGCAC CAGGCGACCT TCAAGGACAT CGGCGACATA
ACGGACGAGG AATGGGAGCT GACCTTCAAG GTCAACATCC ACGCGATGTT CCATCTGACC
AAGGCGGCGG TGCCGCACAT GAAGCCGGGC AGCGCCATCA TCAACACCGC CTCGGTGAAT
TCGGACATGC CGAATCCAAT GCTGCTGGCC TATGCCACCA CCAAGGGCGC GATCCAGAAC
TTCACCGGCG GGCTGGCGCA GATGCTGGCG CCCAAGGGGA TTCGCGCCAA CGCCGTGGCG
CCGGGGCCGA TCTGGACCCC GTTGATTCCA TCGACCATGC CGGAGGAGGC GGTGAAGAAT
TTCGGCAAGC AAACGCCGAT GCAGCGCCCA GGCCAGCCGG CCGAACTCGC CACAGCTTAC
GTGATGCTGG CCGATCCGTT GTCGAGCTAT GTCTCCGGCA CCACCATTGC GGTCACCGGC
GGCAAGCCGT TCATCTGA
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| Protein sequence | MLHYPKPPFA SQAQPMPGST DAMTPRPDHG EDSYKGSGRL AGMKAVITGG DSGIGRAVAI
AYAREGADIL ISYLDENEEA AEVKELIERE GRKAVLVPGD LQWPEHCRRV VQRAAEELGG
IDILVNNAAH QATFKDIGDI TDEEWELTFK VNIHAMFHLT KAAVPHMKPG SAIINTASVN
SDMPNPMLLA YATTKGAIQN FTGGLAQMLA PKGIRANAVA PGPIWTPLIP STMPEEAVKN
FGKQTPMQRP GQPAELATAY VMLADPLSSY VSGTTIAVTG GKPFI
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