| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4486 |
|---|
| Symbol | |
|---|
| ID | 4667870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4983743 |
|---|
| End bp | 4984621 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639825674 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_972797 |
|---|
| Protein GI | 120613119 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0684702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTCG ATCCCCGCAC CGCCGGCCCC CGTCCGCCTT TCGAAGACCA GAAGCCCCTC
ACACCGCCCG GCTCCGAAAC CGACATGCAC CCGCAGCCCG ACTACGGCGC CACGTCGTAC
AAGGGCTCGG GCAAGCTCCA GGGGCGCCGC GCCGTCATCA CGGGCGGCGA CAGCGGCATC
GGCCGCGCGG TGGCGCTGGC CTTCGCGCGC GAGGGCGCGG ACGTGCTCAT CGCCTATCTG
CCCGAGGAAG AGGCCGATGC GCGCAAGACC CTCGACATCG TCACCGCCGA GGGCCGCCGC
GCCGTGGGCG TGCCGGGCGA CATCCGCGAA GAGGCCCACT GCAACGCCAT CATCGAGCGC
GCGGTGAAGG AGTTCGGCGG CATCGACATC CTCGTCAACA ACGCCGCCTA CCAGATGTCG
CACGAGAGCA TCGACGAGAT CTCGGCCGAG GAGTTCGACC GCACCTTCCG CACCAACGTC
TATGCCACGT TCTACCTGAG CAAGGCGGCG GCCAGGCACA TGCCGGCAGG CAGCGCCATC
ATCAACACCG TCTCGGTGAA CGCGGACAAG CCCAACAAGA CGCTGCTGGC CTATGCCTCC
ACCAAGGGCG CGCTGCAGAA CTTCACGGGC GGGCTCGCCC AACTGCTGGC CGACAAGGGC
ATCCGCGTGA ACTGCGTGGC GCCCGGCCCG ATCTGGACGC CGCTGATTCC GTCCACGATG
CCGATCGAGC GCGCGCGCGA GTTCGGCAAG CAGGTACCGC TGCAGCGCCC CGGCCAACCC
GCCGAGGTGG CGCCGGCCTA TGTGATGCTG GCGTCCGACC AGGCGAGCTT CATCTCGGGC
GCGACGGTGG CGGTGACGGG CGGCGTACCG ATCATCTAG
|
|---|
| Protein sequence | MPLDPRTAGP RPPFEDQKPL TPPGSETDMH PQPDYGATSY KGSGKLQGRR AVITGGDSGI
GRAVALAFAR EGADVLIAYL PEEEADARKT LDIVTAEGRR AVGVPGDIRE EAHCNAIIER
AVKEFGGIDI LVNNAAYQMS HESIDEISAE EFDRTFRTNV YATFYLSKAA ARHMPAGSAI
INTVSVNADK PNKTLLAYAS TKGALQNFTG GLAQLLADKG IRVNCVAPGP IWTPLIPSTM
PIERAREFGK QVPLQRPGQP AEVAPAYVML ASDQASFISG ATVAVTGGVP II
|
|---|
| |