Gene Bphyt_2025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_2025 
Symbol 
ID6282586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2288534 
End bp2289400 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content62% 
IMG OID642621590 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001895656 
Protein GI187924014 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000209901 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGACA CGCAACGTCC CACGCCACCT TTTCAGAACC AGCAGCAGGA CCAGACACCC 
GGGCAAACCG CGCCCATGAA ACCGCAACCG GATCACGGCG AGAAGTCGTA TAAGGGCTCT
GGACGTCTCG CCGGCAAGGC CGCCATCATT ACCGGCGGCG ATAGCGGAAT TGGCCGCGCG
GTCGCGATTG CATTCGCACG CGAGGGCGCC GACGTGCTGA TTTCCTACCT CAACGAAGAC
GACGATGCGC GCGAAACCGC GCGCTGGGTC GAGGACGCCG GCCGCAAGGC GTTACTGCTG
CGAGGCGACA TCACGAACCC GGCGCATTGC AAGGAGATCG TCGAGCGGGC GTTCGAGGCG
TTCGGCCGGC TCGACGTGCT GGTCAACAAT GCGGCCTATC AGATGAGCTA TCCGTCGCTC
GAAGACATCA GCGACGAAGA GTGGGACAAG ACCTTCGATA CCAACATCGG TGCGATGTTC
AGGATCACGC GGGCGGCGGT GAAGTATATG AAACCGGGTG CGTCGATCGT GAATACGTCG
TCGATCAATG CGGATCATCC CAATCCGGGC TTGATCGCCT ACGCGACCAC CAAAGGCGCG
ATTCAGAATT TCACCGGCGG CCTTGCTCAA TTGCTGGCGG AGAAGGGCAT ACGGGCGAAC
TGCGTCGCGC CGGGGCCGAT CTGGACACCG TTGATTCCAT CGACCATGCC GCCCGAGAAA
GTCGAGAAAT TCGGTGAGCA GGTACCGATG AAACGCCCGG GTCAGCCCGC CGAACTGGCC
GCTGCCTACG TGATGCTGGC CTCCGACGAA GCCAGCTATA TCTCGGGCGC GACGATCGCG
GTGACGGGCG GGGCGCCGAT TATCTGA
 
Protein sequence
MTDTQRPTPP FQNQQQDQTP GQTAPMKPQP DHGEKSYKGS GRLAGKAAII TGGDSGIGRA 
VAIAFAREGA DVLISYLNED DDARETARWV EDAGRKALLL RGDITNPAHC KEIVERAFEA
FGRLDVLVNN AAYQMSYPSL EDISDEEWDK TFDTNIGAMF RITRAAVKYM KPGASIVNTS
SINADHPNPG LIAYATTKGA IQNFTGGLAQ LLAEKGIRAN CVAPGPIWTP LIPSTMPPEK
VEKFGEQVPM KRPGQPAELA AAYVMLASDE ASYISGATIA VTGGAPII