More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2677 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2677  oxidoreductase, short chain dehydrogenase/reductase family  100 
 
 
286 aa  592  1e-168  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.822958  n/a   
 
 
-
 
NC_007005  Psyr_2411  Short-chain dehydrogenase/reductase SDR  95.1 
 
 
286 aa  565  1e-160  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2723  short chain dehydrogenase/reductase family oxidoreductase  80.28 
 
 
285 aa  482  1e-135  Pseudomonas putida KT2440  Bacteria  normal  0.612253  normal 
 
 
-
 
NC_009512  Pput_3031  short-chain dehydrogenase/reductase SDR  80.57 
 
 
285 aa  480  1e-134  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3001  short-chain dehydrogenase/reductase SDR  79.58 
 
 
285 aa  479  1e-134  Pseudomonas putida GB-1  Bacteria  normal  0.798039  normal 
 
 
-
 
NC_007492  Pfl01_2695  Short-chain dehydrogenase/reductase SDR  77.39 
 
 
285 aa  466  9.999999999999999e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00727931 
 
 
-
 
NC_010501  PputW619_2859  short-chain dehydrogenase/reductase SDR  76.76 
 
 
285 aa  450  1e-125  Pseudomonas putida W619  Bacteria  normal  0.170147  normal  0.262214 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  65.85 
 
 
285 aa  390  1e-107  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_010623  Bphy_4750  short-chain dehydrogenase/reductase SDR  65.37 
 
 
288 aa  385  1e-106  Burkholderia phymatum STM815  Bacteria  normal  0.306467  normal  0.765133 
 
 
-
 
NC_010681  Bphyt_2025  short-chain dehydrogenase/reductase SDR  66.31 
 
 
288 aa  384  1e-106  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.000209901 
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  64.18 
 
 
288 aa  381  1e-105  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  63.73 
 
 
285 aa  383  1e-105  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  63.38 
 
 
285 aa  382  1e-105  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_013757  Gobs_3064  short-chain dehydrogenase/reductase SDR  66.78 
 
 
285 aa  377  1e-104  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.638488  n/a   
 
 
-
 
NC_011894  Mnod_1379  short-chain dehydrogenase/reductase SDR  63.03 
 
 
286 aa  377  1e-103  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.268463  n/a   
 
 
-
 
NC_011988  Avi_5588  dehydrogenase  64.31 
 
 
285 aa  376  1e-103  Agrobacterium vitis S4  Bacteria  normal  0.861783  n/a   
 
 
-
 
NC_014210  Ndas_1784  short-chain dehydrogenase/reductase SDR  65.67 
 
 
280 aa  370  1e-101  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.348942  normal  0.531836 
 
 
-
 
NC_010511  M446_0844  short-chain dehydrogenase/reductase SDR  61.27 
 
 
286 aa  366  1e-100  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2460  short-chain dehydrogenase/reductase SDR  62.68 
 
 
286 aa  367  1e-100  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.239121  normal 
 
 
-
 
NC_011004  Rpal_2362  short-chain dehydrogenase/reductase SDR  60.49 
 
 
286 aa  364  1e-100  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.453828  n/a   
 
 
-
 
NC_011366  Rleg2_5800  short-chain dehydrogenase/reductase SDR  62.54 
 
 
285 aa  366  1e-100  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0775551 
 
 
-
 
NC_012858  Rleg_6701  short-chain dehydrogenase/reductase SDR  61.48 
 
 
285 aa  362  3e-99  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.539155  normal  0.142405 
 
 
-
 
NC_007925  RPC_1231  short-chain dehydrogenase/reductase SDR  62.06 
 
 
285 aa  361  6e-99  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000245222 
 
 
-
 
NC_010581  Bind_2992  short-chain dehydrogenase/reductase SDR  60.99 
 
 
285 aa  359  2e-98  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4064  short-chain dehydrogenase/reductase SDR  60.21 
 
 
285 aa  359  2e-98  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2662  short-chain dehydrogenase/reductase SDR  59.09 
 
 
286 aa  359  3e-98  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.392241  normal 
 
 
-
 
NC_009428  Rsph17025_2997  short-chain dehydrogenase/reductase SDR  61.13 
 
 
285 aa  359  3e-98  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.402229  normal  0.230445 
 
 
-
 
NC_009049  Rsph17029_2578  short-chain dehydrogenase/reductase SDR  62.77 
 
 
285 aa  358  6e-98  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.319892  normal  0.963036 
 
 
-
 
NC_007493  RSP_0919  Short-chain dehydrogenase/reductase SDR  62.41 
 
 
285 aa  358  8e-98  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4304  short-chain dehydrogenase/reductase SDR  59.44 
 
 
311 aa  357  1.9999999999999998e-97  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  59.79 
 
 
286 aa  355  3.9999999999999996e-97  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_008686  Pden_1134  short-chain dehydrogenase/reductase SDR  59.36 
 
 
285 aa  355  5.999999999999999e-97  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  61.99 
 
 
300 aa  352  5.9999999999999994e-96  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  58.72 
 
 
288 aa  345  7e-94  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_008752  Aave_4486  short-chain dehydrogenase/reductase SDR  60.07 
 
 
292 aa  341  5.999999999999999e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0684702 
 
 
-
 
NC_010725  Mpop_4720  short-chain dehydrogenase/reductase SDR  58.3 
 
 
290 aa  337  1.9999999999999998e-91  Methylobacterium populi BJ001  Bacteria  normal  decreased coverage  0.00355451 
 
 
-
 
NC_010505  Mrad2831_1999  short-chain dehydrogenase/reductase SDR  57.6 
 
 
291 aa  336  2.9999999999999997e-91  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.791141  normal  0.178884 
 
 
-
 
NC_011757  Mchl_4573  short-chain dehydrogenase/reductase SDR  57.95 
 
 
290 aa  335  3.9999999999999995e-91  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0102101 
 
 
-
 
NC_010172  Mext_4203  short-chain dehydrogenase/reductase SDR  57.95 
 
 
290 aa  334  9e-91  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.424888 
 
 
-
 
NC_013061  Phep_2635  short-chain dehydrogenase/reductase SDR  59.65 
 
 
298 aa  330  1e-89  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.795136 
 
 
-
 
NC_010505  Mrad2831_3745  short-chain dehydrogenase/reductase SDR  55.75 
 
 
292 aa  324  1e-87  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.082877 
 
 
-
 
NC_011891  A2cp1_3000  short-chain dehydrogenase/reductase SDR  54.29 
 
 
295 aa  323  2e-87  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.546475  n/a   
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  53.93 
 
 
295 aa  322  4e-87  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_009664  Krad_2810  short-chain dehydrogenase/reductase SDR  59.63 
 
 
298 aa  318  6e-86  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  53.57 
 
 
295 aa  317  2e-85  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  52.86 
 
 
293 aa  314  9.999999999999999e-85  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_014151  Cfla_3237  short-chain dehydrogenase/reductase SDR  57.8 
 
 
308 aa  313  1.9999999999999998e-84  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.278854  normal  0.143787 
 
 
-
 
NC_009972  Haur_2365  short-chain dehydrogenase/reductase SDR  54.55 
 
 
288 aa  306  3e-82  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000784864  n/a   
 
 
-
 
NC_013093  Amir_3986  short-chain dehydrogenase/reductase SDR  55.05 
 
 
297 aa  303  2.0000000000000002e-81  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0453  short-chain dehydrogenase/reductase SDR  54.51 
 
 
284 aa  301  5.000000000000001e-81  Spirosoma linguale DSM 74  Bacteria  normal  0.22798  normal 
 
 
-
 
NC_008541  Arth_0126  short-chain dehydrogenase/reductase SDR  56.79 
 
 
298 aa  302  5.000000000000001e-81  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0060  short-chain dehydrogenase/reductase SDR  53.79 
 
 
293 aa  301  6.000000000000001e-81  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.116516  normal  0.834143 
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  54.48 
 
 
287 aa  300  3e-80  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0818  short chain dehydrogenase  53.68 
 
 
288 aa  299  4e-80  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4376  Short-chain dehydrogenase/reductase SDR  53.24 
 
 
285 aa  298  5e-80  Ralstonia eutropha JMP134  Bacteria  normal  0.896027  n/a   
 
 
-
 
NC_010087  Bmul_5540  short-chain dehydrogenase/reductase SDR  54.29 
 
 
333 aa  298  7e-80  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.752467  normal  0.0103168 
 
 
-
 
NC_011729  PCC7424_1059  short-chain dehydrogenase/reductase SDR  55.09 
 
 
284 aa  298  8e-80  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.102631 
 
 
-
 
NC_009674  Bcer98_0632  short chain dehydrogenase  53.14 
 
 
288 aa  297  1e-79  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.000000680928  n/a   
 
 
-
 
NC_006274  BCZK0655  short chain dehydrogenase  53.68 
 
 
288 aa  296  2e-79  Bacillus cereus E33L  Bacteria  hitchhiker  0.000332724  n/a   
 
 
-
 
NC_011658  BCAH187_A0912  short chain dehydrogenase  53.68 
 
 
288 aa  296  2e-79  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2428  Short-chain dehydrogenase/reductase SDR  52.33 
 
 
285 aa  294  9e-79  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00441007 
 
 
-
 
NC_005945  BAS0712  short chain dehydrogenase  52.94 
 
 
288 aa  294  1e-78  Bacillus anthracis str. Sterne  Bacteria  normal  0.712851  n/a   
 
 
-
 
NC_005957  BT9727_0663  short chain dehydrogenase  52.94 
 
 
288 aa  294  1e-78  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0748  short chain dehydrogenase  52.94 
 
 
288 aa  294  1e-78  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0824  short chain dehydrogenase  52.94 
 
 
288 aa  294  1e-78  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.87827e-53 
 
 
-
 
NC_011725  BCB4264_A0805  short chain dehydrogenase  53.31 
 
 
288 aa  293  2e-78  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4525  short chain dehydrogenase  52.94 
 
 
288 aa  293  2e-78  Bacillus cereus G9842  Bacteria  normal  normal  0.193288 
 
 
-
 
NC_013730  Slin_5467  short-chain dehydrogenase/reductase SDR  54.14 
 
 
305 aa  293  3e-78  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0243  short-chain dehydrogenase/reductase SDR  53.93 
 
 
304 aa  293  3e-78  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_11090  Short-chain dehydrogenase/reductase  53.58 
 
 
286 aa  293  3e-78  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6190  short-chain dehydrogenase/reductase SDR  53.57 
 
 
335 aa  291  6e-78  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1180  Short-chain dehydrogenase/reductase SDR  51.77 
 
 
293 aa  291  7e-78  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0727781  n/a   
 
 
-
 
NC_009077  Mjls_1306  short-chain dehydrogenase/reductase SDR  53.53 
 
 
285 aa  291  1e-77  Mycobacterium sp. JLS  Bacteria  normal  0.603842  normal 
 
 
-
 
NC_013411  GYMC61_1520  short-chain dehydrogenase/reductase SDR  53.36 
 
 
287 aa  290  2e-77  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_0667  short chain dehydrogenase  52.57 
 
 
288 aa  289  3e-77  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.401827  n/a   
 
 
-
 
NC_013159  Svir_27180  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  52.21 
 
 
281 aa  290  3e-77  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1277  short-chain dehydrogenase/reductase SDR  53.16 
 
 
285 aa  289  3e-77  Mycobacterium sp. MCS  Bacteria  normal  0.716847  n/a   
 
 
-
 
NC_008705  Mkms_1294  short-chain dehydrogenase/reductase SDR  53.16 
 
 
285 aa  289  3e-77  Mycobacterium sp. KMS  Bacteria  normal  normal  0.110576 
 
 
-
 
NC_007643  Rru_A3667  Short-chain dehydrogenase/reductase SDR  51.23 
 
 
284 aa  288  8e-77  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.847413  n/a   
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  51.59 
 
 
297 aa  288  1e-76  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0042  short-chain dehydrogenase/reductase SDR  54.68 
 
 
282 aa  286  2e-76  Opitutus terrae PB90-1  Bacteria  normal  normal  0.144902 
 
 
-
 
NC_013730  Slin_4034  short-chain dehydrogenase/reductase SDR  53.57 
 
 
335 aa  287  2e-76  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000556089  normal 
 
 
-
 
NC_013132  Cpin_0994  short-chain dehydrogenase/reductase SDR  53.07 
 
 
288 aa  286  2e-76  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0261  short-chain dehydrogenase/reductase SDR  53.73 
 
 
285 aa  286  2e-76  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.566144  normal 
 
 
-
 
NC_008781  Pnap_2744  short chain dehydrogenase  54.12 
 
 
334 aa  286  2e-76  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.972914  normal  0.0520687 
 
 
-
 
NC_012918  GM21_0121  short-chain dehydrogenase/reductase SDR  53.48 
 
 
286 aa  285  5e-76  Geobacter sp. M21  Bacteria  n/a    normal  0.984934 
 
 
-
 
NC_011146  Gbem_0138  short-chain dehydrogenase/reductase SDR  53.11 
 
 
286 aa  285  5.999999999999999e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3474  short-chain dehydrogenase/reductase SDR  50.9 
 
 
285 aa  285  9e-76  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.345409 
 
 
-
 
NC_009441  Fjoh_2643  short-chain dehydrogenase/reductase SDR  52.31 
 
 
334 aa  284  1.0000000000000001e-75  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_15410  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  54.39 
 
 
313 aa  284  1.0000000000000001e-75  Brachybacterium faecium DSM 4810  Bacteria  normal  0.170308  n/a   
 
 
-
 
NC_008025  Dgeo_2288  short-chain dehydrogenase/reductase SDR  51.42 
 
 
306 aa  283  2.0000000000000002e-75  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3838  short-chain dehydrogenase/reductase SDR  53.26 
 
 
286 aa  283  3.0000000000000004e-75  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.066838  normal 
 
 
-
 
NC_008060  Bcen_1246  short-chain dehydrogenase/reductase SDR  53.93 
 
 
335 aa  282  5.000000000000001e-75  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.927114  n/a   
 
 
-
 
NC_008544  Bcen2424_6586  short-chain dehydrogenase/reductase SDR  53.93 
 
 
335 aa  282  5.000000000000001e-75  Burkholderia cenocepacia HI2424  Bacteria  normal  0.830153  normal 
 
 
-
 
NC_012803  Mlut_22650  short-chain alcohol dehydrogenase like protein  54.85 
 
 
306 aa  282  6.000000000000001e-75  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_19840  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  51.97 
 
 
297 aa  281  9e-75  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5903  short-chain dehydrogenase/reductase SDR  52.86 
 
 
333 aa  281  1e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.828162  normal 
 
 
-
 
NC_008463  PA14_36870  putative short-chain dehydrogenase  49.29 
 
 
286 aa  279  4e-74  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3411  oxidoreductase  50.35 
 
 
294 aa  278  7e-74  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3405  oxidoreductase  50.35 
 
 
294 aa  278  7e-74  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.441834 
 
 
-
 
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