Gene Cpin_0994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0994 
Symbol 
ID8357108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1195107 
End bp1195973 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content48% 
IMG OID644963148 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003120693 
Protein GI256420040 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAAGT CAGAAGATAA AAAGCAAATA AGACCGGAGC AGGAACAACC GCGCCAGCCA 
GGCATAGAAT CGGAAATGGA ACCCAAACCG GTATTTGAGA AAAAGGAAGG TCCTGTAGGT
AAACTAATGG ACAGAGTAGC CCTTATTACC GGTGGTGATA GCGGTATCGG AAGGGCAGTA
GCGGTAGCTT TTGCCAGAGA AGGGGCAAAT GTTGTTATTG CCTACCTGGA TGAACACGAC
GATGCCGCAT TGACACAGAG GCATGTAGAA GAATATGGAC GTAAAGCATT ACTGGTGCCG
GGGGATTTAT CTGATGAAAA ACACTGTGCA GCTGTTGTGG CGAAAGCAGT AGATACTTTC
GGCAGACTGG ACATTGTCGT GAATAATGCA GCGGTACAAT ATCCACAGAA AAATCTGGAA
GATATTACTG CGGAGCAGTT ACAGAAGACT TTCGCCACCA ATATCTTTTC ACAATTCTAT
ATTTCAAAGG CAGCCCTGCC ACACTTGAAG GAGGGCGCTG CTATCATCAA CACGACTTCT
GTTACTGCAT ACAGAGGCAG TGGGCATCTC ATCGATTATT CCAGCACGAA AGGAGCTATT
GTCAGCTTTA CCCGCTCTCT TTCATCTACG CTGGCAGAAA GAAAGATCAG GGTAAATGCG
GTAGCGCCCG GACCTATCTG GACACCATTG ATACCTGCCA CCTTTGATGC GGAACATGTA
AAAACCTTCG GTTCGGACGT GCCTTTGAAA CGCGCGGGAG AACCTGTGGA AGTAGCTGCC
AGTTATGTAT TCCTGGCCAG TGATGACGCC AGTTATATGA CAGGACAGGT GCTGCATCCC
AACGGGGGAG AAATCGTGAA TGGCTAG
 
Protein sequence
MQKSEDKKQI RPEQEQPRQP GIESEMEPKP VFEKKEGPVG KLMDRVALIT GGDSGIGRAV 
AVAFAREGAN VVIAYLDEHD DAALTQRHVE EYGRKALLVP GDLSDEKHCA AVVAKAVDTF
GRLDIVVNNA AVQYPQKNLE DITAEQLQKT FATNIFSQFY ISKAALPHLK EGAAIINTTS
VTAYRGSGHL IDYSSTKGAI VSFTRSLSST LAERKIRVNA VAPGPIWTPL IPATFDAEHV
KTFGSDVPLK RAGEPVEVAA SYVFLASDDA SYMTGQVLHP NGGEIVNG