105 homologs were found in PanDaTox collection
for query gene PSPTO_2420 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2420  transcription antitermination protein, putative  100 
 
 
210 aa  426  1e-118  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2207  ANTAR  98.1 
 
 
210 aa  420  1e-117  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4901  response regulator receiver/ANTAR domain-containing protein  43.62 
 
 
216 aa  168  6e-41  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.138975 
 
 
-
 
NC_007511  Bcep18194_B1847  response regulator receiver/ANTAR domain-containing protein  41.05 
 
 
203 aa  164  9e-40  Burkholderia sp. 383  Bacteria  normal  0.871675  normal  0.25422 
 
 
-
 
NC_010002  Daci_3637  response regulator receiver/ANTAR domain-containing protein  41.29 
 
 
229 aa  162  5.0000000000000005e-39  Delftia acidovorans SPH-1  Bacteria  normal  0.0573839  normal  0.0644959 
 
 
-
 
NC_012880  Dd703_0802  ANTAR domain protein with unknown sensor  41.85 
 
 
212 aa  148  7e-35  Dickeya dadantii Ech703  Bacteria  normal  0.0673655  n/a   
 
 
-
 
NC_010676  Bphyt_5752  response regulator receiver and ANTAR domain protein  35.68 
 
 
216 aa  132  3e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.320255  normal  0.798388 
 
 
-
 
NC_012858  Rleg_6646  ANTAR domain protein with unknown sensor  36.51 
 
 
207 aa  122  3e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.274077  normal  0.0846161 
 
 
-
 
NC_011366  Rleg2_5693  ANTAR domain protein with unknown sensor  36.51 
 
 
207 aa  122  4e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0468503  normal 
 
 
-
 
NC_010515  Bcenmc03_5906  response regulator receiver/ANTAR domain-containing protein  35.79 
 
 
206 aa  120  9.999999999999999e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  normal  0.0816062 
 
 
-
 
NC_007953  Bxe_C1304  response regulator receiver/ANTAR domain-containing protein  37.1 
 
 
206 aa  120  1.9999999999999998e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2995  hypothetical protein  38.34 
 
 
213 aa  118  6e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0461  response regulator receiver/ANTAR domain-containing protein  31.89 
 
 
208 aa  114  8.999999999999998e-25  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.537058 
 
 
-
 
NC_009439  Pmen_4597  response regulator receiver/ANTAR domain-containing protein  32.62 
 
 
199 aa  107  1e-22  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1952  putative aliphatic amidase regulator (AmiR)  44.07 
 
 
148 aa  105  7e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0050  response regulator receiver and ANTAR domain protein  34.57 
 
 
200 aa  99.8  3e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4420  response regulator receiver/ANTAR domain-containing protein  35.11 
 
 
208 aa  97.1  2e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_20590  aliphatic amidase regulator  30.43 
 
 
196 aa  92.4  4e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00237487  normal  0.77718 
 
 
-
 
NC_009656  PSPA7_1767  aliphatic amidase regulator  30.98 
 
 
196 aa  90.1  2e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2144  response regulator receiver/ANTAR domain-containing protein  25.53 
 
 
194 aa  70.5  0.00000000002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1754  response regulator receiver/ANTAR domain-containing protein  28.41 
 
 
204 aa  68.6  0.00000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.299806  normal  0.0795607 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  30.07 
 
 
196 aa  63.5  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  31.47 
 
 
196 aa  63.2  0.000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4296  ANTAR  26.82 
 
 
194 aa  62.4  0.000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0466063 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  28.17 
 
 
197 aa  62.4  0.000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  38.2 
 
 
208 aa  61.2  0.00000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  28.69 
 
 
191 aa  60.1  0.00000003  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009485  BBta_3201  hypothetical protein  33.33 
 
 
221 aa  59.3  0.00000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6673  ANTAR domain protein with unknown sensor  23.28 
 
 
193 aa  58.9  0.00000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0170316  normal  0.327107 
 
 
-
 
NC_009429  Rsph17025_3278  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  27.46 
 
 
199 aa  58.5  0.00000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.225286  normal  0.994762 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  29.91 
 
 
197 aa  58.5  0.00000006  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  28.7 
 
 
194 aa  58.2  0.00000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
220 aa  57  0.0000002  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  30.53 
 
 
192 aa  56.2  0.0000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_011988  Avi_5638  Response regulator antiterminator domain-containing protein  26.42 
 
 
201 aa  55.5  0.0000006  Agrobacterium vitis S4  Bacteria  normal  0.0386912  n/a   
 
 
-
 
NC_007494  RSP_3259  transcription antitermination protein  26.94 
 
 
199 aa  53.9  0.000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3021  response regulator receiver/ANTAR domain-containing protein  32.73 
 
 
221 aa  52.8  0.000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.646198 
 
 
-
 
NC_009050  Rsph17029_3991  response regulator receiver/ANTAR domain-containing protein  26.94 
 
 
199 aa  52.8  0.000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  27.27 
 
 
188 aa  52.8  0.000004  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  25.64 
 
 
194 aa  52.8  0.000004  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3323  response regulator receiver/ANTAR domain-containing protein  34.62 
 
 
213 aa  52.4  0.000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168384  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  24.79 
 
 
194 aa  51.6  0.000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_010320  Teth514_2177  response regulator receiver/ANTAR domain-containing protein  25.44 
 
 
190 aa  51.6  0.000009  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  28.97 
 
 
198 aa  50.8  0.00002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  26.57 
 
 
194 aa  50.8  0.00002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  23.45 
 
 
195 aa  48.9  0.00006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  30.34 
 
 
205 aa  48.1  0.00008  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  23.48 
 
 
199 aa  47  0.0002  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_008261  CPF_0888  response regulator  23.89 
 
 
191 aa  46.6  0.0002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  26.13 
 
 
213 aa  47  0.0002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  23.48 
 
 
199 aa  47  0.0002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_011004  Rpal_2662  response regulator receiver and ANTAR domain protein  29.09 
 
 
221 aa  47.4  0.0002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.151243  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  28.83 
 
 
206 aa  46.2  0.0004  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  27.27 
 
 
202 aa  45.8  0.0005  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_012912  Dd1591_1437  ANTAR domain protein with unknown sensor  29 
 
 
429 aa  45.8  0.0005  Dickeya zeae Ech1591  Bacteria  normal  0.997771  n/a   
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  25.26 
 
 
195 aa  45.1  0.0008  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2590  response regulator receiver/ANTAR domain-containing protein  32.47 
 
 
193 aa  45.1  0.0008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.0012524 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  25.23 
 
 
229 aa  45.1  0.0008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  25.45 
 
 
229 aa  45.1  0.0008  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  26.36 
 
 
205 aa  45.1  0.0009  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  46.94 
 
 
217 aa  44.7  0.001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  25.45 
 
 
201 aa  44.7  0.001  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  25.23 
 
 
205 aa  44.3  0.001  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  25.87 
 
 
195 aa  44.3  0.001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  26.57 
 
 
195 aa  44.7  0.001  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  25.87 
 
 
195 aa  44.3  0.001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  25.45 
 
 
201 aa  44.3  0.001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  23.42 
 
 
206 aa  44.3  0.001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_002939  GSU2822  response regulator  27.27 
 
 
191 aa  43.9  0.002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  23.21 
 
 
214 aa  43.5  0.002  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  27.93 
 
 
206 aa  43.9  0.002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  25.81 
 
 
192 aa  43.5  0.002  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  22.41 
 
 
192 aa  43.5  0.002  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_012880  Dd703_2508  ANTAR domain protein with unknown sensor  29.67 
 
 
427 aa  43.5  0.002  Dickeya dadantii Ech703  Bacteria  normal  0.102211  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  25.45 
 
 
215 aa  43.5  0.002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  24.6 
 
 
242 aa  43.9  0.002  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  23.42 
 
 
210 aa  43.1  0.003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  23.42 
 
 
210 aa  43.1  0.003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  23.42 
 
 
210 aa  43.1  0.003  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  26.92 
 
 
193 aa  43.1  0.003  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  41.18 
 
 
194 aa  43.1  0.003  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_010581  Bind_1968  response regulator receiver/ANTAR domain-containing protein  24.11 
 
 
193 aa  43.5  0.003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0963  response regulator receiver and ANTAR domain protein  23.33 
 
 
191 aa  43.1  0.003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000231614  normal 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  24.39 
 
 
189 aa  43.1  0.003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  24.32 
 
 
212 aa  42.7  0.004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  21.55 
 
 
191 aa  42.7  0.004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  28.57 
 
 
194 aa  42.7  0.004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  25.55 
 
 
226 aa  42.7  0.004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  27.92 
 
 
196 aa  42.4  0.005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  22.22 
 
 
192 aa  42.4  0.005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  24.79 
 
 
221 aa  42.4  0.005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  25.23 
 
 
200 aa  42.4  0.005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  24.55 
 
 
204 aa  42.4  0.005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1538  ANTAR domain protein with unknown sensor  27.55 
 
 
429 aa  42.4  0.005  Pectobacterium wasabiae WPP163  Bacteria  normal  0.585588  n/a   
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  21.55 
 
 
191 aa  42  0.006  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_007650  BTH_II1167  response regulator NasT  25.13 
 
 
198 aa  42.4  0.006  Burkholderia thailandensis E264  Bacteria  normal  0.136185  n/a   
 
 
-
 
NC_009253  Dred_2864  Fis family transcriptional regulator  38.78 
 
 
191 aa  42  0.006  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000561884  n/a   
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  22.22 
 
 
192 aa  42.4  0.006  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  21.55 
 
 
191 aa  42  0.006  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  21.55 
 
 
191 aa  42  0.006  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
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