131 homologs were found in PanDaTox collection
for query gene Smed_1754 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_1754  response regulator receiver/ANTAR domain-containing protein  100 
 
 
204 aa  416  9.999999999999999e-116  Sinorhizobium medicae WSM419  Bacteria  normal  0.299806  normal  0.0795607 
 
 
-
 
NC_009429  Rsph17025_3278  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  52.2 
 
 
199 aa  172  2.9999999999999996e-42  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.225286  normal  0.994762 
 
 
-
 
NC_007494  RSP_3259  transcription antitermination protein  52.2 
 
 
199 aa  168  4e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3991  response regulator receiver/ANTAR domain-containing protein  52.2 
 
 
199 aa  167  1e-40  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5638  Response regulator antiterminator domain-containing protein  43.65 
 
 
201 aa  155  5.0000000000000005e-37  Agrobacterium vitis S4  Bacteria  normal  0.0386912  n/a   
 
 
-
 
NC_012858  Rleg_6673  ANTAR domain protein with unknown sensor  38.04 
 
 
193 aa  117  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0170316  normal  0.327107 
 
 
-
 
NC_007947  Mfla_0461  response regulator receiver/ANTAR domain-containing protein  26.46 
 
 
208 aa  84.7  8e-16  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.537058 
 
 
-
 
NC_009485  BBta_2995  hypothetical protein  29.83 
 
 
213 aa  83.6  0.000000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1847  response regulator receiver/ANTAR domain-containing protein  32.09 
 
 
203 aa  83.2  0.000000000000003  Burkholderia sp. 383  Bacteria  normal  0.871675  normal  0.25422 
 
 
-
 
NC_008786  Veis_4901  response regulator receiver/ANTAR domain-containing protein  30.88 
 
 
216 aa  79.7  0.00000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.138975 
 
 
-
 
NC_010002  Daci_3637  response regulator receiver/ANTAR domain-containing protein  30.17 
 
 
229 aa  77.4  0.0000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.0573839  normal  0.0644959 
 
 
-
 
NC_010676  Bphyt_5752  response regulator receiver and ANTAR domain protein  28.89 
 
 
216 aa  76.6  0.0000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.320255  normal  0.798388 
 
 
-
 
NC_009439  Pmen_4597  response regulator receiver/ANTAR domain-containing protein  23.4 
 
 
199 aa  70.1  0.00000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2207  ANTAR  27.84 
 
 
210 aa  69.3  0.00000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2420  transcription antitermination protein, putative  28.41 
 
 
210 aa  68.6  0.00000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3201  hypothetical protein  28.42 
 
 
221 aa  67  0.0000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5906  response regulator receiver/ANTAR domain-containing protein  25.99 
 
 
206 aa  67  0.0000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  normal  0.0816062 
 
 
-
 
NC_012880  Dd703_0802  ANTAR domain protein with unknown sensor  27.22 
 
 
212 aa  66.2  0.0000000003  Dickeya dadantii Ech703  Bacteria  normal  0.0673655  n/a   
 
 
-
 
NC_007925  RPC_3021  response regulator receiver/ANTAR domain-containing protein  25.93 
 
 
221 aa  66.2  0.0000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.646198 
 
 
-
 
NC_009656  PSPA7_1767  aliphatic amidase regulator  30.77 
 
 
196 aa  66.2  0.0000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1304  response regulator receiver/ANTAR domain-containing protein  25.7 
 
 
206 aa  65.5  0.0000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0050  response regulator receiver and ANTAR domain protein  26.46 
 
 
200 aa  63.5  0.000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  38.71 
 
 
200 aa  62.8  0.000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  32.12 
 
 
191 aa  62.8  0.000000004  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_009485  BBta_1952  putative aliphatic amidase regulator (AmiR)  33.94 
 
 
148 aa  62.4  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  32.12 
 
 
191 aa  62.8  0.000000004  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  32.12 
 
 
191 aa  62.4  0.000000004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  32.85 
 
 
192 aa  62  0.000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  32.12 
 
 
191 aa  62  0.000000006  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_011004  Rpal_2662  response regulator receiver and ANTAR domain protein  27.51 
 
 
221 aa  61.6  0.000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.151243  n/a   
 
 
-
 
NC_008463  PA14_20590  aliphatic amidase regulator  29.17 
 
 
196 aa  61.6  0.000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00237487  normal  0.77718 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  32.85 
 
 
192 aa  61.6  0.000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4296  ANTAR  30.5 
 
 
194 aa  61.2  0.00000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0466063 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  31.86 
 
 
201 aa  60.1  0.00000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  32.12 
 
 
191 aa  60.1  0.00000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  31.97 
 
 
192 aa  60.5  0.00000002  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  34.19 
 
 
189 aa  59.3  0.00000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  31.39 
 
 
191 aa  58.5  0.00000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
NC_007492  Pfl01_1784  response regulator receiver  31.39 
 
 
191 aa  58.2  0.00000009  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2144  response regulator receiver/ANTAR domain-containing protein  27.04 
 
 
194 aa  57.8  0.0000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  31.9 
 
 
198 aa  57.8  0.0000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  31.39 
 
 
192 aa  56.6  0.0000002  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  34.74 
 
 
206 aa  55.8  0.0000004  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  29.03 
 
 
197 aa  55.5  0.0000006  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  34.38 
 
 
212 aa  55.1  0.0000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  32.63 
 
 
227 aa  54.7  0.0000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  33.93 
 
 
207 aa  53.5  0.000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_012858  Rleg_6646  ANTAR domain protein with unknown sensor  23.3 
 
 
207 aa  53.9  0.000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.274077  normal  0.0846161 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  32.77 
 
 
194 aa  53.5  0.000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  31.96 
 
 
220 aa  53.5  0.000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  30.21 
 
 
226 aa  52.4  0.000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_010505  Mrad2831_3323  response regulator receiver/ANTAR domain-containing protein  28.08 
 
 
213 aa  52.8  0.000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168384  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  31.58 
 
 
220 aa  52  0.000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  31.58 
 
 
204 aa  51.6  0.000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  29.58 
 
 
191 aa  51.6  0.000008  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  32.14 
 
 
194 aa  51.6  0.000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  23.96 
 
 
219 aa  50.8  0.00001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  33.04 
 
 
218 aa  51.2  0.00001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  31.86 
 
 
196 aa  51.2  0.00001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  32.74 
 
 
196 aa  51.2  0.00001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  36.26 
 
 
200 aa  50.8  0.00001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5693  ANTAR domain protein with unknown sensor  22.73 
 
 
207 aa  50.8  0.00001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0468503  normal 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  32.97 
 
 
213 aa  50.4  0.00002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  29.5 
 
 
221 aa  50.1  0.00002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  32.97 
 
 
229 aa  50.4  0.00002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_007511  Bcep18194_B1340  response regulator receiver/ANTAR domain-containing protein  29.09 
 
 
198 aa  49.7  0.00003  Burkholderia sp. 383  Bacteria  normal  normal  0.579049 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  34.07 
 
 
210 aa  49.7  0.00003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  34.07 
 
 
210 aa  49.7  0.00003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  32.61 
 
 
197 aa  50.1  0.00003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  34.07 
 
 
210 aa  49.7  0.00003  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  28.21 
 
 
212 aa  49.7  0.00003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  29.03 
 
 
229 aa  49.3  0.00004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  32.26 
 
 
201 aa  49.3  0.00004  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_010552  BamMC406_4403  response regulator receiver/ANTAR domain-containing protein  30 
 
 
198 aa  49.3  0.00004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.155669 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  31.25 
 
 
207 aa  48.9  0.00005  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  30 
 
 
198 aa  48.9  0.00005  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  33.7 
 
 
247 aa  48.9  0.00005  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  29.09 
 
 
201 aa  48.9  0.00005  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  27.35 
 
 
212 aa  48.9  0.00005  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  33.33 
 
 
201 aa  48.9  0.00005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  28.21 
 
 
195 aa  48.1  0.00008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  32.26 
 
 
198 aa  48.1  0.00008  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  32.97 
 
 
205 aa  48.1  0.00009  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  23.28 
 
 
214 aa  47.4  0.0001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  26.28 
 
 
195 aa  47.4  0.0001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  31.58 
 
 
205 aa  47.4  0.0001  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  30.4 
 
 
192 aa  47.8  0.0001  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  29.17 
 
 
206 aa  46.6  0.0002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  28.48 
 
 
198 aa  46.6  0.0002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  30 
 
 
206 aa  46.6  0.0003  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  25 
 
 
224 aa  46.2  0.0003  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  30.11 
 
 
215 aa  46.2  0.0003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  24.16 
 
 
214 aa  45.8  0.0004  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  28.48 
 
 
219 aa  46.2  0.0004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  28.48 
 
 
219 aa  46.2  0.0004  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  26.32 
 
 
198 aa  46.2  0.0004  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  26.81 
 
 
206 aa  45.4  0.0005  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  27.78 
 
 
197 aa  45.4  0.0005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  26.81 
 
 
206 aa  45.4  0.0005  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  27.93 
 
 
210 aa  45.4  0.0006  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>