155 homologs were found in PanDaTox collection
for query gene BBta_1952 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_1952  putative aliphatic amidase regulator (AmiR)  100 
 
 
148 aa  294  2e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4901  response regulator receiver/ANTAR domain-containing protein  49.57 
 
 
216 aa  119  1.9999999999999998e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.138975 
 
 
-
 
NC_010002  Daci_3637  response regulator receiver/ANTAR domain-containing protein  45.97 
 
 
229 aa  111  4.0000000000000004e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.0573839  normal  0.0644959 
 
 
-
 
NC_009439  Pmen_4597  response regulator receiver/ANTAR domain-containing protein  43.28 
 
 
199 aa  107  5e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2207  ANTAR  44.07 
 
 
210 aa  105  2e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2420  transcription antitermination protein, putative  44.07 
 
 
210 aa  105  3e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2995  hypothetical protein  41.1 
 
 
213 aa  101  3e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0802  ANTAR domain protein with unknown sensor  41.94 
 
 
212 aa  100  9e-21  Dickeya dadantii Ech703  Bacteria  normal  0.0673655  n/a   
 
 
-
 
NC_007511  Bcep18194_B1847  response regulator receiver/ANTAR domain-containing protein  38.84 
 
 
203 aa  95.5  2e-19  Burkholderia sp. 383  Bacteria  normal  0.871675  normal  0.25422 
 
 
-
 
NC_010676  Bphyt_5752  response regulator receiver and ANTAR domain protein  38.14 
 
 
216 aa  91.3  5e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.320255  normal  0.798388 
 
 
-
 
NC_007953  Bxe_C1304  response regulator receiver/ANTAR domain-containing protein  36.36 
 
 
206 aa  78.2  0.00000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6646  ANTAR domain protein with unknown sensor  39.17 
 
 
207 aa  78.6  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.274077  normal  0.0846161 
 
 
-
 
NC_010515  Bcenmc03_5906  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
206 aa  77.8  0.00000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  normal  0.0816062 
 
 
-
 
NC_011366  Rleg2_5693  ANTAR domain protein with unknown sensor  38.33 
 
 
207 aa  77  0.00000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0468503  normal 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
196 aa  72.4  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
196 aa  70.9  0.000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0461  response regulator receiver/ANTAR domain-containing protein  32.76 
 
 
208 aa  70.1  0.000000000009  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.537058 
 
 
-
 
NC_010505  Mrad2831_4420  response regulator receiver/ANTAR domain-containing protein  30.37 
 
 
208 aa  69.3  0.00000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  36.21 
 
 
191 aa  66.6  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  32.5 
 
 
195 aa  65.5  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_010681  Bphyt_0050  response regulator receiver and ANTAR domain protein  38.6 
 
 
200 aa  64.7  0.0000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2144  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
194 aa  62.4  0.000000002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1754  response regulator receiver/ANTAR domain-containing protein  33.94 
 
 
204 aa  62.4  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.299806  normal  0.0795607 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  37.37 
 
 
192 aa  62  0.000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  35.65 
 
 
194 aa  62  0.000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  31.47 
 
 
220 aa  61.6  0.000000004  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  33.08 
 
 
194 aa  61.2  0.000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
194 aa  61.2  0.000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_20590  aliphatic amidase regulator  33.9 
 
 
196 aa  60.5  0.000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00237487  normal  0.77718 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  30.09 
 
 
229 aa  60.1  0.00000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  32.43 
 
 
194 aa  60.1  0.00000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  35.09 
 
 
197 aa  59.7  0.00000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
198 aa  58.2  0.00000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  35.48 
 
 
201 aa  57.4  0.00000006  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  35.48 
 
 
201 aa  57  0.00000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  42.47 
 
 
208 aa  56.6  0.0000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  29.2 
 
 
226 aa  56.6  0.0000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  28.95 
 
 
220 aa  55.5  0.0000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  28.07 
 
 
227 aa  55.8  0.0000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  29.6 
 
 
197 aa  55.8  0.0000002  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  33.33 
 
 
200 aa  55.1  0.0000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  34.65 
 
 
188 aa  54.7  0.0000004  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009656  PSPA7_1767  aliphatic amidase regulator  32.41 
 
 
196 aa  55.1  0.0000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  30 
 
 
242 aa  54.3  0.0000005  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  27.27 
 
 
189 aa  53.9  0.0000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  33.03 
 
 
202 aa  53.1  0.000001  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_008261  CPF_0888  response regulator  30.09 
 
 
191 aa  53.1  0.000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  35.87 
 
 
205 aa  53.5  0.000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  26.96 
 
 
215 aa  53.5  0.000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_007484  Noc_1494  response regulator  31.67 
 
 
194 aa  52.4  0.000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  34.65 
 
 
195 aa  52.4  0.000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_009429  Rsph17025_3278  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  32.11 
 
 
199 aa  52  0.000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.225286  normal  0.994762 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  33.86 
 
 
195 aa  51.6  0.000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  33.86 
 
 
195 aa  51.6  0.000003  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3201  hypothetical protein  26.67 
 
 
221 aa  50.8  0.000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  34.45 
 
 
202 aa  51.2  0.000005  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  34.78 
 
 
204 aa  50.8  0.000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  26.79 
 
 
221 aa  50.8  0.000007  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_012858  Rleg_6673  ANTAR domain protein with unknown sensor  28.7 
 
 
193 aa  50.4  0.000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0170316  normal  0.327107 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  26.52 
 
 
198 aa  50.4  0.000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_002939  GSU2822  response regulator  31.53 
 
 
191 aa  50.1  0.00001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  30.93 
 
 
199 aa  50.1  0.00001  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  30.97 
 
 
205 aa  50.1  0.00001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  31.18 
 
 
213 aa  49.7  0.00001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  34.45 
 
 
204 aa  50.1  0.00001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  30.11 
 
 
212 aa  49.7  0.00001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  30.93 
 
 
199 aa  50.1  0.00001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  28.37 
 
 
210 aa  48.9  0.00002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  32.26 
 
 
195 aa  48.9  0.00002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  30.77 
 
 
214 aa  48.9  0.00003  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  29.17 
 
 
194 aa  48.1  0.00003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  29.03 
 
 
206 aa  48.5  0.00003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  32.19 
 
 
208 aa  48.1  0.00004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  32.26 
 
 
220 aa  47.4  0.00006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  30.11 
 
 
229 aa  47.4  0.00007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  32.97 
 
 
198 aa  47.4  0.00007  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  33.02 
 
 
192 aa  47  0.00008  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  34.09 
 
 
247 aa  47.4  0.00008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  31.18 
 
 
200 aa  47  0.00008  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  29.29 
 
 
210 aa  47  0.00009  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  31.58 
 
 
207 aa  47  0.00009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_007494  RSP_3259  transcription antitermination protein  30 
 
 
199 aa  46.2  0.0001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2091  response regulator  32.14 
 
 
187 aa  47  0.0001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  25.22 
 
 
195 aa  46.6  0.0001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2662  response regulator receiver and ANTAR domain protein  27.5 
 
 
221 aa  46.6  0.0001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.151243  n/a   
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  25.95 
 
 
201 aa  45.8  0.0002  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  30.11 
 
 
207 aa  46.2  0.0002  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  30.97 
 
 
217 aa  46.2  0.0002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  23.89 
 
 
194 aa  45.8  0.0002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  29.79 
 
 
194 aa  45.4  0.0002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  31.06 
 
 
191 aa  45.1  0.0003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  41.67 
 
 
219 aa  45.1  0.0003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  27.96 
 
 
210 aa  45.1  0.0003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  41.67 
 
 
219 aa  45.1  0.0003  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  27.96 
 
 
210 aa  45.1  0.0003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3991  response regulator receiver/ANTAR domain-containing protein  30 
 
 
199 aa  45.1  0.0003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  27.96 
 
 
210 aa  45.1  0.0003  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_010717  PXO_01489  histidine kinase/response regulator hybrid protein  38.1 
 
 
83 aa  45.1  0.0003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0209  response regulator receiver/ANTAR domain-containing protein  30.69 
 
 
195 aa  44.7  0.0004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2326  response regulator receiver/ANTAR domain-containing protein  31.07 
 
 
394 aa  45.1  0.0004  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
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