Gene Avi_5638 details

Gene Information

• Locus tag: Avi_5638
• ID: 7381112
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 663020
• End bp: 663625
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643649206
• Product: Response regulator antiterminator domain-containing protein
• Protein accession: YP_002547443
• Protein GI: 222106652
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3707] Response regulator with putative antiterminator output domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0386912
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCGGC CCGAACGTCC TCTGCTTGCC AATTGGCATG CAATCATCCT GCATCGCCCG 
CATCCTTCCG TCGATGCGCT GCAACGCCAG CTCGAACTCC TGCATATTCG GGTGACGGTC 
GCCTGGCCGC AACTGGACGA AAGCCATGCC GGGGCCGATA TCGTGTTTTT CGATGCCGAT 
ATGGGTCATG ACGGTCAATT TCCCTGGCCA GCCGGCTTTG CGCCGATGCC GATGATCGCA 
CTGATCGGCT CGGAAACCCC GGGGCGGATC GAATGGGCGC TGTCGCAAGG CTCCAATGCC 
CATCTCCTAA AACCGGTCGG CTCTACCGGT GCCTATAGCG CCCTGTTGAT CGCCGCCCAT 
GCCTATCAGG CAGCCCGCAG CCAGGCCGAT GACATCCGCA ATCTTGAAAA CCGGGTCCGC 
CAAAGGCCGG TCGTGGTGCA TGCCGTGCTG GAATTGCTGC GGCAGGGCGC CTGCACCGAG 
GCCGAGGCCT GGCGCAGATT GCGCATGGTG GCGATGGACT GGGGCATGAC CATCGAGGAT 
GCCGCCGAGG CCATCTGCCG CAATGACCGG CATATCGGCG AGTTTCCGAT CCCGAAATCC 
AACTGA 

 

Protein sequence

MKRPERPLLA NWHAIILHRP HPSVDALQRQ LELLHIRVTV AWPQLDESHA GADIVFFDAD 
MGHDGQFPWP AGFAPMPMIA LIGSETPGRI EWALSQGSNA HLLKPVGSTG AYSALLIAAH 
AYQAARSQAD DIRNLENRVR QRPVVVHAVL ELLRQGACTE AEAWRRLRMV AMDWGMTIED 
AAEAICRNDR HIGEFPIPKS N