100 homologs were found in PanDaTox collection
for query gene RSP_3259 on replicon NC_007494
Organism: Rhodobacter sphaeroides 2.4.1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007494  RSP_3259  transcription antitermination protein  100 
 
 
199 aa  397  9.999999999999999e-111  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3991  response regulator receiver/ANTAR domain-containing protein  99.5 
 
 
199 aa  395  1e-109  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3278  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  92.46 
 
 
199 aa  373  1e-102  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.225286  normal  0.994762 
 
 
-
 
NC_011988  Avi_5638  Response regulator antiterminator domain-containing protein  54.01 
 
 
201 aa  183  1.0000000000000001e-45  Agrobacterium vitis S4  Bacteria  normal  0.0386912  n/a   
 
 
-
 
NC_009636  Smed_1754  response regulator receiver/ANTAR domain-containing protein  52.2 
 
 
204 aa  168  4e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.299806  normal  0.0795607 
 
 
-
 
NC_012858  Rleg_6673  ANTAR domain protein with unknown sensor  38.67 
 
 
193 aa  104  8e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0170316  normal  0.327107 
 
 
-
 
NC_009485  BBta_2995  hypothetical protein  31.44 
 
 
213 aa  77.8  0.00000000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0461  response regulator receiver/ANTAR domain-containing protein  29.95 
 
 
208 aa  75.5  0.0000000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.537058 
 
 
-
 
NC_008786  Veis_4901  response regulator receiver/ANTAR domain-containing protein  32.1 
 
 
216 aa  72.8  0.000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.138975 
 
 
-
 
NC_007925  RPC_3021  response regulator receiver/ANTAR domain-containing protein  27.94 
 
 
221 aa  72.4  0.000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.646198 
 
 
-
 
NC_011004  Rpal_2662  response regulator receiver and ANTAR domain protein  29.5 
 
 
221 aa  68.6  0.00000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.151243  n/a   
 
 
-
 
NC_007953  Bxe_C1304  response regulator receiver/ANTAR domain-containing protein  28.57 
 
 
206 aa  68.6  0.00000000006  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3201  hypothetical protein  27.36 
 
 
221 aa  67.8  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5752  response regulator receiver and ANTAR domain protein  27.37 
 
 
216 aa  67  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.320255  normal  0.798388 
 
 
-
 
NC_007958  RPD_4296  ANTAR  31.45 
 
 
194 aa  66.6  0.0000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0466063 
 
 
-
 
NC_010002  Daci_3637  response regulator receiver/ANTAR domain-containing protein  31.9 
 
 
229 aa  65.9  0.0000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.0573839  normal  0.0644959 
 
 
-
 
NC_007511  Bcep18194_B1847  response regulator receiver/ANTAR domain-containing protein  31.48 
 
 
203 aa  65.1  0.0000000007  Burkholderia sp. 383  Bacteria  normal  0.871675  normal  0.25422 
 
 
-
 
NC_009512  Pput_2144  response regulator receiver/ANTAR domain-containing protein  28.74 
 
 
194 aa  63.5  0.000000002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5906  response regulator receiver/ANTAR domain-containing protein  26.82 
 
 
206 aa  62.4  0.000000005  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  normal  0.0816062 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  35.59 
 
 
189 aa  60.5  0.00000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_012880  Dd703_0802  ANTAR domain protein with unknown sensor  28.09 
 
 
212 aa  60.1  0.00000002  Dickeya dadantii Ech703  Bacteria  normal  0.0673655  n/a   
 
 
-
 
NC_010505  Mrad2831_4420  response regulator receiver/ANTAR domain-containing protein  30.65 
 
 
208 aa  58.5  0.00000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2207  ANTAR  27.46 
 
 
210 aa  57  0.0000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6646  ANTAR domain protein with unknown sensor  26.23 
 
 
207 aa  57  0.0000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.274077  normal  0.0846161 
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  34.21 
 
 
194 aa  56.2  0.0000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_010505  Mrad2831_3323  response regulator receiver/ANTAR domain-containing protein  29.35 
 
 
213 aa  56.2  0.0000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168384  normal 
 
 
-
 
NC_011366  Rleg2_5693  ANTAR domain protein with unknown sensor  27.03 
 
 
207 aa  56.2  0.0000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0468503  normal 
 
 
-
 
NC_009439  Pmen_4597  response regulator receiver/ANTAR domain-containing protein  26.04 
 
 
199 aa  56.6  0.0000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  31.09 
 
 
198 aa  55.1  0.0000007  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  28.81 
 
 
195 aa  55.1  0.0000007  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_010681  Bphyt_0050  response regulator receiver and ANTAR domain protein  27.17 
 
 
200 aa  54.3  0.000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2420  transcription antitermination protein, putative  26.94 
 
 
210 aa  53.9  0.000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  32.46 
 
 
208 aa  52.8  0.000004  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1767  aliphatic amidase regulator  26.67 
 
 
196 aa  52.4  0.000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  30.77 
 
 
214 aa  52  0.000006  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  27.97 
 
 
212 aa  51.6  0.000008  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  27.97 
 
 
212 aa  51.2  0.000009  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  27.7 
 
 
195 aa  50.8  0.00001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_008463  PA14_20590  aliphatic amidase regulator  25.41 
 
 
196 aa  50.1  0.00002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00237487  normal  0.77718 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  32 
 
 
206 aa  50.4  0.00002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  28.1 
 
 
194 aa  49.3  0.00003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  29.91 
 
 
200 aa  49.7  0.00003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  32.5 
 
 
206 aa  48.9  0.00005  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  28.19 
 
 
196 aa  48.9  0.00006  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  25.89 
 
 
201 aa  48.1  0.00008  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  30.09 
 
 
219 aa  48.1  0.00008  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  25.44 
 
 
195 aa  48.1  0.00009  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  31.09 
 
 
198 aa  47.4  0.0001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  28.7 
 
 
212 aa  47.8  0.0001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  29.66 
 
 
205 aa  47.8  0.0001  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  23.2 
 
 
202 aa  46.6  0.0002  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  26.7 
 
 
196 aa  47  0.0002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  26.81 
 
 
198 aa  46.6  0.0002  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  24.03 
 
 
191 aa  46.2  0.0003  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  24.03 
 
 
191 aa  46.2  0.0003  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0209  response regulator receiver/ANTAR domain-containing protein  25 
 
 
195 aa  46.6  0.0003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1952  putative aliphatic amidase regulator (AmiR)  30 
 
 
148 aa  46.2  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  27.82 
 
 
203 aa  46.2  0.0004  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  26.21 
 
 
224 aa  45.8  0.0004  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  25.17 
 
 
191 aa  45.8  0.0004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  26.99 
 
 
213 aa  45.4  0.0005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  28.7 
 
 
220 aa  45.4  0.0005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  28.29 
 
 
206 aa  45.4  0.0006  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  28.29 
 
 
206 aa  45.4  0.0006  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  28.57 
 
 
200 aa  45.4  0.0006  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  30.3 
 
 
192 aa  45.1  0.0007  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  27.15 
 
 
192 aa  44.7  0.0008  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  24.03 
 
 
191 aa  44.7  0.001  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  27.27 
 
 
221 aa  44.3  0.001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_007498  Pcar_2091  response regulator  26.09 
 
 
187 aa  44.3  0.001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  30.63 
 
 
197 aa  44.3  0.001  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  29.66 
 
 
215 aa  44.7  0.001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  30.91 
 
 
208 aa  44.3  0.001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  28.45 
 
 
210 aa  43.9  0.001  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  28.45 
 
 
210 aa  43.9  0.002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  28.18 
 
 
201 aa  43.5  0.002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  28.99 
 
 
194 aa  43.9  0.002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  28.8 
 
 
214 aa  43.5  0.002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  28.45 
 
 
210 aa  43.9  0.002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  26.79 
 
 
191 aa  43.9  0.002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  27.27 
 
 
196 aa  43.5  0.002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  25.44 
 
 
188 aa  43.5  0.002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  29.73 
 
 
207 aa  43.1  0.003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  25.87 
 
 
192 aa  43.1  0.003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  28.18 
 
 
201 aa  43.1  0.003  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  26.83 
 
 
197 aa  42.7  0.003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  28.07 
 
 
207 aa  42.7  0.003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  27.19 
 
 
195 aa  42.4  0.005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  21.93 
 
 
194 aa  42.4  0.005  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  31.91 
 
 
205 aa  42  0.005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  26.96 
 
 
227 aa  42.4  0.005  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  25.17 
 
 
192 aa  42  0.006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  24.48 
 
 
191 aa  41.6  0.007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  32.73 
 
 
207 aa  41.6  0.007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  27.59 
 
 
229 aa  41.6  0.008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  27.19 
 
 
226 aa  41.6  0.008  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_008228  Patl_2529  response regulator receiver/ANTAR domain-containing protein  26.32 
 
 
212 aa  41.6  0.008  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  26.06 
 
 
204 aa  41.2  0.009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  27.19 
 
 
229 aa  41.2  0.01  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  24.48 
 
 
191 aa  41.2  0.01  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>